Clusters of Characterized Proteins

Clustering the characterized proteins for glcU' (Glucose uptake protein GlcU) in D-glucose catabolism

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Definition of glcU'

• Curated sequence O07881: Glucose uptake protein GlcU. Glucose uptake permease, GlcU
• Curated sequence P40420: Glucose uptake protein GlcU. Glucose permease, GlcU (also called YcxE). (Fiegler et al., 1999) (similar to 2.A.7.5.1)
• Curated sequence L8DP77: The glucose uptake porter of 285 aas, GlcU
• Curated sequence Q9CDF7: Glucose:H+ symporter, GlcU (YxfA) (high specificity, low affinity)
• Comment: Named glcU' in GapMind to distinguish from an ABC transporter component named glcU

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 285-295 amino acids (not heteromeric)

GLCU_STAXY / O07881 Glucose uptake protein GlcU from Staphylococcus xylosus
TC 2.A.7.5.1 / O07881 Glucose uptake permease, GlcU from Staphylococcus xylosus
PFams: Sugar_transport
288 amino acids: PaperBLAST, CDD, Compare to cluster

GLCU_BACSU / P40420 Glucose uptake protein GlcU from Bacillus subtilis (strain 168)
TC 2.A.7.5.4 / P40420 Glucose permease, GlcU (also called YcxE). (Fiegler et al., 1999) (similar to 2.A.7.5.1) from Bacillus subtilis (strain 168)
PFams: Sugar_transport
287 amino acids: PaperBLAST, CDD, Compare to cluster

TC 2.A.7.5.5 / L8DP77 The glucose uptake porter of 285 aas, GlcU from Listeria monocytogenes
PFams: Sugar_transport
285 amino acids: PaperBLAST, CDD, Compare to cluster

TC 2.A.7.5.3 / Q9CDF7 Glucose:H+ symporter, GlcU (YxfA) (high specificity, low affinity) from Lactococcus lactis subsp. lactis
PFams: EamA, Sugar_transport
295 amino acids: PaperBLAST, CDD, Compare to cluster