GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for kdgD (5-dehydro-4-deoxyglucarate dehydratase) in D-glucuronate catabolism

Or see other characterized proteins similar to kdgD

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Definition of kdgD

Fetched 9 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 9 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 303-306 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

A1VMN2 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Polaromonas naphthalenivorans CJ2
PFams: DHDPS
303 amino acids: PaperBLAST, CDD, Compare to cluster

B7WZA5 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Comamonas testosteroni
PFams: DHDPS
303 amino acids: PaperBLAST, CDD, Compare to cluster

Q6FFQ1 5-dehydro-4-deoxyglucarate dehydratase subunit (EC 4.2.1.41) from Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
KDGD_ACIAD / Q6FFQ1 Probable 5-dehydro-4-deoxyglucarate dehydratase; 5-keto-4-deoxy-glucarate dehydratase; KDGDH; EC 4.2.1.41 from Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
Q6FFQ1 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Acinetobacter baylyi
PFams: DHDPS
303 amino acids: PaperBLAST, CDD, Compare to cluster

Q8UB77 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Agrobacterium fabrum
PFams: DHDPS
303 amino acids: PaperBLAST, CDD, Compare to cluster

BPHYT_RS24155 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Burkholderia phytofirmans PsJN
PFams: DHDPS
305 amino acids: PaperBLAST, CDD, Compare to cluster

HSERO_RS15785 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Herbaspirillum seropedicae SmR1
PFams: DHDPS
306 amino acids: PaperBLAST, CDD, Compare to cluster

PP_3599 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Pseudomonas putida KT2440
PFams: DHDPS
303 amino acids: PaperBLAST, CDD, Compare to cluster

PS417_04195 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Pseudomonas simiae WCS417
PFams: DHDPS
303 amino acids: PaperBLAST, CDD, Compare to cluster

Pf1N1B4_1110 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) from Pseudomonas fluorescens FW300-N1B4
PFams: DHDPS
303 amino acids: PaperBLAST, CDD, Compare to cluster