GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for udh (D-glucuronate dehydrogenase) in D-glucuronate catabolism

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Definition of udh

Fetched 6 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 6 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 265-284 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

Q7CRQ0 D-uronate dehydrogenase moomer (EC 1.1.1.203) from Agrobacterium fabrum (strain C58 / ATCC 33970)
URODH_AGRFC / Q7CRQ0 Uronate dehydrogenase; D-galacturonate dehydrogenase; D-glucuronate dehydrogenase; Hexuronate dehydrogenase; EC 1.1.1.203 from Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium tumefaciens (strain C58))
Q7CRQ0 uronate dehydrogenase (EC 1.1.1.203) from Agrobacterium tumefaciens
PFams: RmlD_sub_bind, 3Beta_HSD, Epimerase, GDP_Man_Dehyd, NAD_binding_4
265 amino acids: PaperBLAST, CDD, Compare to cluster

Q888H1 uronic acid dehydrogenase subunit (EC 1.1.1.203) from Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)
URODH_PSESM / Q888H1 Uronate dehydrogenase; D-galacturonate dehydrogenase; D-glucuronate dehydrogenase; Hexuronate dehydrogenase; EC 1.1.1.203 from Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)
Q888H1 uronate dehydrogenase (EC 1.1.1.203) from Pseudomonas syringae pv. tomato
PFams: RmlD_sub_bind, Epimerase, Polysacc_synt_2, 3Beta_HSD, NAD_binding_10, GDP_Man_Dehyd, NAD_binding_4
275 amino acids: PaperBLAST, CDD, Compare to cluster

PP_1171 Uronate dehydrogenase (EC 1.1.1.203) from Pseudomonas putida KT2440
URODH_PSEPK / Q88NN6 Uronate dehydrogenase; D-galacturonate dehydrogenase; D-glucuronate dehydrogenase; Hexuronate dehydrogenase; EC 1.1.1.203 from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
Q88NN6 uronate dehydrogenase (EC 1.1.1.203) from Pseudomonas putida KT2440
PFams: RmlD_sub_bind, Epimerase, 3Beta_HSD, NAD_binding_10, GDP_Man_Dehyd, NAD_binding_4
268 amino acids: PaperBLAST, CDD, Compare to cluster

HSERO_RS23040 D-galacturonate dehydrogenase (EC 1.1.1.203) from Herbaspirillum seropedicae SmR1
PFams: RmlD_sub_bind, Epimerase, GDP_Man_Dehyd, 3Beta_HSD, NAD_binding_10, NAD_binding_4
284 amino acids: PaperBLAST, CDD, Compare to cluster

PS417_17360 D-galacturonate dehydrogenase (EC 1.1.1.203) from Pseudomonas simiae WCS417
PFams: RmlD_sub_bind, Epimerase, 3Beta_HSD, NAD_binding_10, GDP_Man_Dehyd, NAD_binding_4
274 amino acids: PaperBLAST, CDD, Compare to cluster

Pf1N1B4_4511 D-galacturonate dehydrogenase (EC 1.1.1.203) from Pseudomonas fluorescens FW300-N1B4
PFams: RmlD_sub_bind, Epimerase, 3Beta_HSD, NAD_binding_10, GDP_Man_Dehyd, NAD_binding_4
270 amino acids: PaperBLAST, CDD, Compare to cluster