Clusters of Characterized Proteins

Clustering the characterized proteins for gltJ (L-glutamate ABC transporter, permease component 1 (gltJ/aatQ)) in L-glutamate catabolism

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Definition of gltJ

• Curated sequence P0AER3: Glutamate/aspartate import permease protein GltJ. Glutamate/aspartate transport system permease protein GltJ aka B0654, component of Glutamate/aspartate porter. glutamate/aspartate ABC transporter membrane subunit GltJ (EC 7.4.2.1). glutamate/aspartate ABC transporter membrane subunit GltJ (EC 7.4.2.1)
• Curated sequence Q88NY3: PP1070, component of Acidic amino acid uptake porter, AatJMQP
• Curated sequence Pf1N1B4_772: ABC transporter for L-asparagine and L-glutamate, permease component 1
• Curated sequence AO353_16285: ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, permease component 2
• Curated sequence Q9I403: Amino acid ABC transporter membrane protein, component of Amino acid transporter, AatJMQP. Probably transports L-glutamic acid, D-glutamine acid, L-glutamine and N-acetyl L-glutamic acid (Johnson et al. 2008). Very similar to 3.A.1.3.19 of P. putida
• Ignore hits to PfGW456L13_4771 when looking for 'other' hits (ABC transporter for L-Asparagine and possibly other L-amino acids, permease component 1)

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 5 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 246-248 amino acids (heteromeric)

b0654 glutamate/aspartate ABC transporter membrane subunit GltJ (EC 7.4.2.1) from Escherichia coli K-12 substr. MG1655
P0AER3 glutamate/aspartate ABC transporter membrane subunit GltJ (EC 7.4.2.1) from Escherichia coli (strain K12)
GLTJ_ECOLI / P0AER3 Glutamate/aspartate import permease protein GltJ from Escherichia coli (strain K12)
TC 3.A.1.3.4 / P0AER3 Glutamate/aspartate transport system permease protein GltJ aka B0654, component of Glutamate/aspartate porter from Escherichia coli
PFams: BPD_transp_1
Heteromeric, 246 amino acids: PaperBLAST, CDD, Compare to cluster

TC 3.A.1.3.19 / Q88NY3 PP1070, component of Acidic amino acid uptake porter, AatJMQP from Pseudomonas putida (strain KT2440)
PFams: BPD_transp_1
Heteromeric, 248 amino acids: PaperBLAST, CDD, Compare to cluster

TC 3.A.1.3.22 / Q9I403 Amino acid ABC transporter membrane protein, component of Amino acid transporter, AatJMQP. Probably transports L-glutamic acid, D-glutamine acid, L-glutamine and N-acetyl L-glutamic acid (Johnson et al. 2008). Very similar to 3.A.1.3.19 of P. putida from Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
PFams: BPD_transp_1
Heteromeric, 248 amino acids: PaperBLAST, CDD, Compare to cluster

Pf1N1B4_772 ABC transporter for L-asparagine and L-glutamate, permease component 1 from Pseudomonas fluorescens FW300-N1B4
PFams: BPD_transp_1
Heteromeric, 248 amino acids: PaperBLAST, CDD, Compare to cluster

AO353_16285 ABC transporter for L-aspartate, L-asparagine, L-glutamate, and L-glutamine, permease component 2 from Pseudomonas fluorescens FW300-N2E3
PFams: BPD_transp_1
Heteromeric, 248 amino acids: PaperBLAST, CDD, Compare to cluster