GapMind for Amino acid biosynthesis

 

Clusters of Characterized Proteins

Clustering the characterized proteins for gly1 (L-threonine aldolase) in glycine biosynthesis

Or see other characterized proteins similar to gly1

Or see all steps for glycine biosynthesis

Or cluster curated proteins matching a keyword

Definition of gly1

Fetched 14 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 13 of these sequences

Found 2 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 333-387 amino acids (not heteromeric)

O13427 low-specificity L-threonine aldolase (EC 4.1.2.48) from Candida albicans
PFams: Aminotran_1_2, Beta_elim_lyase
374 amino acids: PaperBLAST, CDD, Compare to cluster

P37303 L-threonine aldolase subunit (EC 4.1.2.48) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GLY1_YEAST / P37303 Low specificity L-threonine aldolase; Low specificity L-TA; TA; EC 4.1.2.48 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
P37303 low-specificity L-threonine aldolase (EC 4.1.2.48) from Saccharomyces cerevisiae
PFams: Beta_elim_lyase
387 amino acids: PaperBLAST, CDD, Compare to cluster

b0870 low-specificity L-threonine aldolase (EC 4.1.2.48; EC 4.1.2.5; EC 4.1.2.26; EC 4.1.2.49) from Escherichia coli K-12 substr. MG1655
P75823 low-specificity L-threonine aldolase (EC 4.1.2.48; EC 4.1.2.26) from Escherichia coli (strain K12)
LTAE_ECOLI / P75823 Low specificity L-threonine aldolase; Low specificity L-TA; EC 4.1.2.48 from Escherichia coli (strain K12)
P75823 low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli
GB|BAA20882.1 threonine aldolase; EC 4.1.2.5 from Escherichia coli K12
PFams: Beta_elim_lyase, Aminotran_1_2
333 amino acids: PaperBLAST, CDD, Compare to cluster

Q9X266 L-threonine aldolase (EC 4.1.2.5) from Thermotoga maritima
PFams: Beta_elim_lyase, Aminotran_1_2, DegT_DnrJ_EryC1, Aminotran_5
343 amino acids: PaperBLAST, CDD, Compare to cluster

GB|AAA72430.1 threonine aldolase; EC 4.1.2.5 from Saccharomyces cerevisiae
PFams: Beta_elim_lyase
387 amino acids: PaperBLAST, CDD, Compare to cluster

CH_123166 L-threonine aldolase from Candida albicans
PFams: Aminotran_1_2, Beta_elim_lyase
373 amino acids: PaperBLAST, CDD, Compare to cluster

THA1_ARATH / Q8RXU4 Low-specificity L-threonine aldolase 1; Threonine aldolase 1; EC 4.1.2.48 from Arabidopsis thaliana (Mouse-ear cress)
PFams: Beta_elim_lyase, Aminotran_1_2, DegT_DnrJ_EryC1
358 amino acids: PaperBLAST, CDD, Compare to cluster

THA2_ARATH / Q9FPH3 Probable low-specificity L-threonine aldolase 2; Threonine aldolase 2; EC 4.1.2.48 from Arabidopsis thaliana (Mouse-ear cress)
PFams: Beta_elim_lyase
355 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 346-348 amino acids (not heteromeric)

A0T1V9 low-specificity L-threonine aldolase (EC 4.1.2.48) from Sinorhizobium arboris
PFams: Beta_elim_lyase
348 amino acids: PaperBLAST, CDD, Compare to cluster

O50584 low-specificity L-threonine aldolase (EC 4.1.2.48) from Pseudomonas sp.
PFams: Beta_elim_lyase
346 amino acids: PaperBLAST, CDD, Compare to cluster

Q88R13 L-threonine aldolase (EC 4.1.2.5) from Pseudomonas putida
PFams: Beta_elim_lyase
346 amino acids: PaperBLAST, CDD, Compare to cluster

PfGW456L13_1114 L-threonine aldolase (EC 4.1.2.5) from Pseudomonas fluorescens GW456-L13
PFams: Beta_elim_lyase
346 amino acids: PaperBLAST, CDD, Compare to cluster

AO353_07670 L-threonine aldolase (EC 4.1.2.5) from Pseudomonas fluorescens FW300-N2E3
PFams: Beta_elim_lyase
346 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

GLYA_HYDTT / D3DKC4 Serine hydroxymethyltransferase; SHMT; Serine methylase; L-threonine/L-allo-threonine aldolase; EC 2.1.2.1; EC 4.1.2.48 from Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6)
PFams: SHMT, Aminotran_1_2
427 amino acids: PaperBLAST, CDD