GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for dhaM (dihydroxyacetone:PEP phosphotransferase, subunit M) in glycerol catabolism

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Definition of dhaM

Fetched 7 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 7 of these sequences

Found 2 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 472-477 amino acids (not heteromeric)

b1198 dihydroxyacetone kinase subunit M from Escherichia coli K-12 substr. MG1655
P37349 dihydroxyacetone kinase subunit M from Escherichia coli (strain K12)
DHAM_ECOLI / P37349 PEP-dependent dihydroxyacetone kinase, phosphoryl donor subunit DhaM; Dihydroxyacetone kinase subunit M; EC 2.7.1.121 from Escherichia coli (strain K12)
P37349 glycerone kinase (EC 2.7.1.29) from Escherichia coli
PFams: EIIA-man, PTS-HPr, PEP-utilisers_N, PEP-utilizers
472 amino acids: PaperBLAST, CDD, Compare to cluster

CH_000735 PTS-dependent dihydroxyacetone kinase, DhaM subunit; EC 2.7.1.- from Escherichia coli K12
PFams: EIIA-man, PTS-HPr, PEP-utilisers_N, PEP-utilizers
473 amino acids: PaperBLAST, CDD, Compare to cluster

DHAM_KLEOK / A0A0H3H456 PEP-dependent dihydroxyacetone kinase, phosphoryl donor subunit DhaM; Dihydroxyacetone kinase subunit M; EC 2.7.1.121 from Klebsiella oxytoca (strain ATCC 8724 / DSM 4798 / JCM 20051 / NBRC 3318 / NRRL B-199 / KCTC 1686)
PFams: EIIA-man, PTS-HPr, PEP-utilisers_N, PEP-utilizers
472 amino acids: PaperBLAST, CDD, Compare to cluster

DHAM_PANAM / D4GL26 PEP-dependent dihydroxyacetone kinase, phosphoryl donor subunit DhaM; Dihydroxyacetone kinase subunit M; EC 2.7.1.121 from Pantoea ananatis (strain LMG 20103)
PFams: EIIA-man, PTS-HPr, PEP-utilisers_N, PEP-utilizers
473 amino acids: PaperBLAST, CDD, Compare to cluster

DHAM_PROSM / P0DN88 PEP-dependent dihydroxyacetone kinase, phosphoryl donor subunit DhaM; Dihydroxyacetone kinase subunit M; EC 2.7.1.121 from Providencia stuartii (strain MRSN 2154)
PFams: EIIA-man, PTS-HPr, PEP-utilisers_N, PEP-utilizers
477 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 123-125 amino acids (not heteromeric)

DHAM2_LISIN / Q92ET9 PEP-dependent dihydroxyacetone kinase 2, phosphoryl donor subunit DhaM; PTS system EIIA component; Phosphotransferase enzyme IIA component; EC 2.7.1.121 from Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
PFams: EIIA-man
125 amino acids: PaperBLAST, CDD, Compare to cluster

DHAM_LACLA / Q9CIV6 PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM; PTS system EIIA component; Phosphotransferase enzyme IIA component; EC 2.7.1.121 from Lactococcus lactis subsp. lactis (strain IL1403) (Streptococcus lactis)
PFams: EIIA-man
123 amino acids: PaperBLAST, CDD, Compare to cluster