GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for glpD (glycerol 3-phosphate dehydrogenase (monomeric)) in glycerol catabolism

Or see other characterized proteins similar to glpD

Or see all steps for glycerol catabolism

Or cluster curated proteins matching a keyword

Definition of glpD

Fetched 12 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 12 of these sequences

Found 1 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 501-727 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

GLPD_BACSU / P18158 Aerobic glycerol-3-phosphate dehydrogenase; EC 1.1.5.3 from Bacillus subtilis (strain 168)
PFams: DAO, DAO_C
555 amino acids: PaperBLAST, CDD, Compare to cluster

b3426 aerobic glycerol 3-phosphate dehydrogenase (EC 1.1.5.3) from Escherichia coli K-12 substr. MG1655
P13035 aerobic glycerol 3-phosphate dehydrogenase (EC 1.1.5.3) from Escherichia coli (strain K12)
P13035 glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) from Escherichia coli
CH_091835 glycerol-3-phosphate dehydrogenase; EC 1.1.5.3 from Escherichia coli K12
PFams: DAO, DAO_C
501 amino acids: PaperBLAST, CDD, Compare to cluster

P35571 glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) from Rattus norvegicus
PFams: DAO, FAD_binding_2, GIDA, DAO_C, EF-hand_7
727 amino acids: PaperBLAST, CDD, Compare to cluster

P43304 mitochondrial glycerol-3-phosphate dehydrogenase subunit (EC 1.1.5.3) from Homo sapiens
P43304 glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) from Homo sapiens
PFams: DAO, FAD_binding_2, DAO_C, EF-hand_7
727 amino acids: PaperBLAST, CDD, Compare to cluster

Q06B39 glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) from Dunaliella salina
PFams: DAO, FAD_binding_2, DAO_C
650 amino acids: PaperBLAST, CDD, Compare to cluster

Q64521 glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) from Mus musculus
PFams: DAO, FAD_binding_2, DAO_C, EF-hand_7
727 amino acids: PaperBLAST, CDD, Compare to cluster

CH_091834 glycerol-3-phosphate dehydrogenase; EC 1.1.5.3 from Pseudomonas aeruginosa
PFams: DAO, DAO_C
512 amino acids: PaperBLAST, CDD, Compare to cluster

CH_122883 glycerol-3-phosphate dehydrogenase, mitochondrial from Candida albicans
PFams: DAO, FAD_binding_2, DAO_C
650 amino acids: PaperBLAST, CDD, Compare to cluster

GPDM_YEAST / P32191 Glycerol-3-phosphate dehydrogenase, mitochondrial; GPD-M; GPDH-M; EC 1.1.5.3 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
PFams: DAO, FAD_binding_2, FAD_oxidored, DAO_C
649 amino acids: PaperBLAST, CDD, Compare to cluster

GPDH_ENCCU / Q8SR40 Probable glycerol-3-phosphate dehydrogenase; GPDH; EC 1.1.5.3 from Encephalitozoon cuniculi (strain GB-M1) (Microsporidian parasite)
PFams: DAO, DAO_C
614 amino acids: PaperBLAST, CDD, Compare to cluster

Q92LM5 Glycerol-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361217}; EC=1.1.5.3 {ECO:0000256|RuleBase:RU361217}
503 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

Q9SS48 glycerol-3-phosphate dehydrogenase (EC 1.1.5.3) from Arabidopsis thaliana
SDP6_ARATH / Q9SS48 Glycerol-3-phosphate dehydrogenase SDP6, mitochondrial; Protein SUGAR-DEPENDENT 6; EC 1.1.5.3 from Arabidopsis thaliana (Mouse-ear cress)
PFams: DAO, DAO_C
629 amino acids: PaperBLAST, CDD
(similar to BRENDA::P35571 from Cluster 1, but similarity to seed sequence is below thresholds)