Clusters of Characterized Proteins

Clustering the characterized proteins for glpS (glycerol ABC transporter, ATPase component 1 (GlpS)) in glycerol catabolism

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Definition of glpS

• Curated sequence G3LHY8: GlpS, component of Glycerol uptake porter, GlpSTPQV
• Curated sequence Ac3H11_791: ABC transporter for Glycerol, ATPase component 1
• Comment: GlpSTPQV from Rhizobium leguminosarum and a related system from Acidovorax GW101-3H11. GlpS/GlpT are similar to each other; GlpS is more similar to Ac3H11_791 and GlpT to Ac3H11_792.

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 358-363 amino acids (heteromeric)

TC 3.A.1.1.35 / G3LHY8 GlpS, component of Glycerol uptake porter, GlpSTPQV from Rhizobium leguminosarum bv. viciae
PFams: ABC_tran
Heteromeric, 358 amino acids: PaperBLAST, CDD, Compare to cluster

Ac3H11_791 ABC transporter for Glycerol, ATPase component 1 from Acidovorax sp. GW101-3H11
PFams: ABC_tran, TOBE_2
Heteromeric, 363 amino acids: PaperBLAST, CDD, Compare to cluster