Clusters of Characterized Proteins

Clustering the characterized proteins for aapJ (L-histidine ABC transporter, substrate-binding component AapJ) in L-histidine catabolism

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Definition of aapJ

• Curated sequence SMc02118: ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, periplasmic substrate-binding component
• Curated sequence Q52812: AapJ, component of General L-amino acid porter; transports basic and acidic amino acids preferentially, but also transports aliphatic amino acids (catalyzes both uptake and efflux)
• Comment: aapJQMP from Rhizobium leguminosarum and Sinorhizobium meliloti

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 341-341 amino acids (heteromeric)

TC 3.A.1.3.8 / Q52812 AapJ, component of General L-amino acid porter; transports basic and acidic amino acids preferentially, but also transports aliphatic amino acids (catalyzes both uptake and efflux) from Rhizobium leguminosarum (biovar viciae)
PFams: SBP_bac_3
Heteromeric, 341 amino acids: PaperBLAST, CDD, Compare to cluster

SMc02118 ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, periplasmic substrate-binding component from Sinorhizobium meliloti 1021
PFams: SBP_bac_3
Heteromeric, 341 amino acids: PaperBLAST, CDD, Compare to cluster