GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for gdh (quinoprotein glucose dehydrogenase) in lactose catabolism

Or see other characterized proteins similar to gdh

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Definition of gdh

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 2 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 796-796 amino acids (not heteromeric)

D4P700 glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pantoea ananatis
PFams: PQQ_2, PQQ, PQQ, PQQ, PQQ, PQQ, PQQ_2, PQQ
796 amino acids: PaperBLAST, CDD, Compare to cluster

b0124 quinoprotein glucose dehydrogenase (EC 1.1.5.2) from Escherichia coli K-12 substr. MG1655
P15877 quinoprotein glucose dehydrogenase (EC 1.1.5.2) from Escherichia coli (strain K12)
DHG_ECOLI / P15877 Quinoprotein glucose dehydrogenase; Glucose dehydrogenase [pyrroloquinoline-quinone]; EC 1.1.5.2 from Escherichia coli (strain K12)
GB|BAB96699.1 quinoprotein glucose dehydrogenase; EC 1.1.5.2 from Escherichia coli K12
ECOCYC|GLUCDEHYDROG-MONOMER glucose dehydrogenase from Escherichia coli K12
PFams: PQQ_2, PQQ, PQQ, PQQ, PQQ, PQQ, PQQ_2, PQQ
796 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 352-371 amino acids (not heteromeric)

I7A144 glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Thermus thermophilus
PFams: GSDH
352 amino acids: PaperBLAST, CDD, Compare to cluster

Q8ZUN8 glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2) from Pyrobaculum aerophilum
PFams: GSDH
371 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

P13650 soluble quinoprotein glucose dehydrogenase monomer (EC 1.1.99.35) from Acinetobacter calcoaceticus
DHGB_ACICA / P13650 Quinoprotein glucose dehydrogenase B; Glucose dehydrogenase B [pyrroloquinoline-quinone]; Soluble glucose dehydrogenase; s-GDH; EC 1.1.5.2 from Acinetobacter calcoaceticus
P13650 glucose 1-dehydrogenase (PQQ, quinone) (EC 1.1.5.2); soluble quinoprotein glucose dehydrogenase (EC 1.1.99.35) from Acinetobacter calcoaceticus
PFams: GSDH, GSDH
478 amino acids: PaperBLAST, CDD