GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for lacIICB (lactose PTS system, fused EIIC and EIIB components) in lactose catabolism

Or see other characterized proteins similar to lacIICB

Or see all steps for lactose catabolism

Or cluster curated proteins matching a keyword

Definition of lacIICB

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 5 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 565-577 amino acids (3/5 heteromeric)

The first sequence in each cluster is the seed.

PTLCB_STAAU / P11162 PTS system lactose-specific EIICB component; EIICB-Lac; EII-Lac; EC 2.7.1.207 from Staphylococcus aureus
TC 4.A.3.1.1 / P11162 PtlB aka LACE, component of Lactose (Lac) porter, LacEF from Staphylococcus aureus
PFams: PTS_EIIC, PTS_IIB
Heteromeric, 570 amino acids: PaperBLAST, CDD, Compare to cluster

PTLCB_LACLL / P23531 PTS system lactose-specific EIICB component; EIICB-Lac; EII-Lac; EC 2.7.1.207 from Lactococcus lactis subsp. lactis (Streptococcus lactis)
PFams: PTS_EIIC, PTS_IIB
568 amino acids: PaperBLAST, CDD, Compare to cluster

PTLCB_LACCA / P24400 PTS system lactose-specific EIICB component; EIICB-Lac; EII-Lac; EC 2.7.1.207 from Lactobacillus casei
PFams: PTS_EIIC, PTS_IIB
577 amino acids: PaperBLAST, CDD, Compare to cluster

TC 4.A.3.1.3 / Q045H3 PTS system lactose-specific IIB component, Lac family / PTS system lactose-specific IIC component, Lac family, component of Lactose PTS group translocator #2, IIA/IICB from Lactobacillus gasseri (strain ATCC 33323 / DSM 20243)
PFams: PTS_EIIC, PTS_IIB
Heteromeric, 565 amino acids: PaperBLAST, CDD, Compare to cluster

TC 4.A.3.1.2 / Q045X3 PTS system lactose-specific IIB component, Lac family / PTS system lactose-specific IIC component, Lac family, component of Lactose PTS group translocator #1, IIA/IICB from Lactobacillus gasseri (strain ATCC 33323 / DSM 20243)
PFams: PTS_EIIC, PTS_IIB
Heteromeric, 567 amino acids: PaperBLAST, CDD, Compare to cluster