GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for liuA (isovaleryl-CoA dehydrogenase) in L-leucine catabolism

Or see other characterized proteins similar to liuA

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Or cluster curated proteins matching a keyword

Definition of liuA

Fetched 20 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 19 of these sequences

Found 1 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 386-430 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

B5UB85 isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Bombyx mori
PFams: Acyl-CoA_dh_N, Acyl-CoA_dh_M, Acyl-CoA_dh_1, Acyl-CoA_dh_2
416 amino acids: PaperBLAST, CDD, Compare to cluster

IVD_RAT / P12007 Isovaleryl-CoA dehydrogenase, mitochondrial; IVD; EC 1.3.8.4 from Rattus norvegicus (Rat)
P12007 isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Rattus norvegicus
PFams: Acyl-CoA_dh_N, Acyl-CoA_dh_M, Acyl-CoA_dh_1, Acyl-CoA_dh_2
424 amino acids: PaperBLAST, CDD, Compare to cluster

IVD_HUMAN / P26440 Isovaleryl-CoA dehydrogenase, mitochondrial; IVD; EC 1.3.8.4 from Homo sapiens (Human)
P26440 isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Homo sapiens
PFams: Acyl-CoA_dh_N, Acyl-CoA_dh_M, Acyl-CoA_dh_1, Acyl-CoA_dh_2
426 amino acids: PaperBLAST, CDD, Compare to cluster

Q75N94 isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Aspergillus oryzae
PFams: Acyl-CoA_dh_N, Acyl-CoA_dh_M, Acyl-CoA_dh_1, Acyl-CoA_dh_2
430 amino acids: PaperBLAST, CDD, Compare to cluster

IVD_ARATH / Q9SWG0 Isovaleryl-CoA dehydrogenase, mitochondrial; IVD; EC 1.3.8.4 from Arabidopsis thaliana (Mouse-ear cress)
Q9SWG0 isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Arabidopsis thaliana
PFams: Acyl-CoA_dh_N, Acyl-CoA_dh_M, Acyl-CoA_dh_1, Acyl-CoA_dh_2
409 amino acids: PaperBLAST, CDD, Compare to cluster

CH_122627 isovaleryl-coenzyme A dehydrogenase; EC 1.3.99.10 from Emericella nidulans
PFams: Acyl-CoA_dh_N, Acyl-CoA_dh_M, Acyl-CoA_dh_1, Acyl-CoA_dh_2
430 amino acids: PaperBLAST, CDD, Compare to cluster

IVD_SOLTU / Q9FS87 Isovaleryl-CoA dehydrogenase, mitochondrial; IVD; Isovaleryl-CoA dehydrogenase 2; St-IVD2; EC 1.3.8.4 from Solanum tuberosum (Potato)
Q9FS87 isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Solanum tuberosum
PFams: Acyl-CoA_dh_N, Acyl-CoA_dh_M, Acyl-CoA_dh_1, Acyl-CoA_dh_2
412 amino acids: PaperBLAST, CDD, Compare to cluster

Q9XCG5 acyl-CoA dehydrogenase subunit (EC 1.3.8.4; EC 1.3.8.5) from Streptomyces avermitilis
PFams: Acyl-CoA_dh_N, Acyl-CoA_dh_M, Acyl-CoA_dh_1, Acyl-CoA_dh_2
386 amino acids: PaperBLAST, CDD, Compare to cluster

Q9I296 isovaleryl-CoA dehydrogenase subunit (EC 1.3.8.4) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PFams: Acyl-CoA_dh_N, Acyl-CoA_dh_M, Acyl-CoA_dh_1, Acyl-CoA_dh_2
387 amino acids: PaperBLAST, CDD, Compare to cluster

Shewana3_1672 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Shewanella sp. ANA-3
PFams: Acyl-CoA_dh_N, Acyl-CoA_dh_M, Acyl-CoA_dh_1, Acyl-CoA_dh_2
389 amino acids: PaperBLAST, CDD, Compare to cluster

PGA1_c10280 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Phaeobacter inhibens BS107
PFams: Acyl-CoA_dh_N, Acyl-CoA_dh_M, Acyl-CoA_dh_1, Acyl-CoA_dh_2
386 amino acids: PaperBLAST, CDD, Compare to cluster

Sama_1362 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Shewanella amazonensis SB2B
PFams: Acyl-CoA_dh_N, Acyl-CoA_dh_M, Acyl-CoA_dh_1, Acyl-CoA_dh_2
389 amino acids: PaperBLAST, CDD, Compare to cluster

SM_b21121 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Sinorhizobium meliloti 1021
PFams: Acyl-CoA_dh_N, Acyl-CoA_dh_M, Acyl-CoA_dh_1, Acyl-CoA_dh_2
387 amino acids: PaperBLAST, CDD, Compare to cluster

PS417_17015 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas simiae WCS417
PFams: Acyl-CoA_dh_N, Acyl-CoA_dh_M, Acyl-CoA_dh_1, Acyl-CoA_dh_2
387 amino acids: PaperBLAST, CDD, Compare to cluster

Ac3H11_2991 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Acidovorax sp. GW101-3H11
PFams: Acyl-CoA_dh_N, Acyl-CoA_dh_M, Acyl-CoA_dh_1, Acyl-CoA_dh_2
396 amino acids: PaperBLAST, CDD, Compare to cluster

Psest_1084 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas stutzeri RCH2
PFams: Acyl-CoA_dh_N, Acyl-CoA_dh_M, Acyl-CoA_dh_1, Acyl-CoA_dh_2
387 amino acids: PaperBLAST, CDD, Compare to cluster

AO353_20350 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas fluorescens FW300-N2E3
PFams: Acyl-CoA_dh_N, Acyl-CoA_dh_M, Acyl-CoA_dh_1, Acyl-CoA_dh_2
387 amino acids: PaperBLAST, CDD, Compare to cluster

AO356_01580 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas fluorescens FW300-N2C3
PFams: Acyl-CoA_dh_N, Acyl-CoA_dh_M, Acyl-CoA_dh_1, Acyl-CoA_dh_2
387 amino acids: PaperBLAST, CDD, Compare to cluster

Pf6N2E2_2191 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas fluorescens FW300-N2E2
PFams: Acyl-CoA_dh_N, Acyl-CoA_dh_M, Acyl-CoA_dh_1, Acyl-CoA_dh_2
387 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

P33224 putative acyl-CoA dehydrogenase AidB (EC 1.3.8.4) from Escherichia coli (strain K12)
AIDB_ECOLI / P33224 Putative acyl-CoA dehydrogenase AidB; EC 1.3.99.- from Escherichia coli (strain K12)
PFams: AidB_N, Acyl-CoA_dh_M, Acyl-CoA_dh_1, Acyl-CoA_dh_2
541 amino acids: PaperBLAST, CDD