GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for liuD (3-methylcrotonyl-CoA carboxylase, beta subunit) in L-leucine catabolism

Or see other characterized proteins similar to liuD

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Or cluster curated proteins matching a keyword

Definition of liuD

Fetched 10 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 10 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 535-587 amino acids (3/10 heteromeric)

The first sequence in each cluster is the seed.

Q9I297 methylcrotonyl-CoA carboxylase β-subunit (EC 6.4.1.4) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I297 methylcrotonoyl-CoA carboxylase (EC 6.4.1.4) from Pseudomonas aeruginosa
PFams: Carboxyl_trans
Heteromeric, 535 amino acids: PaperBLAST, CDD, Compare to cluster

Q9LDD8 methylcrotonoyl-CoA carboxylase (EC 6.4.1.4) from Arabidopsis thaliana
PFams: Carboxyl_trans
587 amino acids: PaperBLAST, CDD, Compare to cluster

CH_122289 non-biotin containing subunit of 3-methylcrotonyl-CoA carboxylase; EC 6.4.1.4 from Emericella nidulans
PFams: Carboxyl_trans
587 amino acids: PaperBLAST, CDD, Compare to cluster

Q9HCC0 3-methylcrotonyl-CoA carboxylase β subunit (EC 6.4.1.4) from Homo sapiens
MCCB_HUMAN / Q9HCC0 Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial; MCCase subunit beta; 3-methylcrotonyl-CoA carboxylase 2; 3-methylcrotonyl-CoA carboxylase non-biotin-containing subunit; 3-methylcrotonyl-CoA:carbon dioxide ligase subunit beta; EC 6.4.1.4 from Homo sapiens (Human)
PFams: Carboxyl_trans
Heteromeric, 563 amino acids: PaperBLAST, CDD, Compare to cluster

MCCB_DROME / Q9V9A7 Probable methylcrotonoyl-CoA carboxylase beta chain, mitochondrial; MCCase subunit beta; 3-methylcrotonyl-CoA carboxylase 2; 3-methylcrotonyl-CoA carboxylase non-biotin-containing subunit; 3-methylcrotonyl-CoA:carbon dioxide ligase subunit beta; EC 6.4.1.4 from Drosophila melanogaster (Fruit fly)
PFams: Carboxyl_trans
578 amino acids: PaperBLAST, CDD, Compare to cluster

Sama_1361 Methylcrotonoyl-CoA carboxylase (EC 6.4.1.4) from Shewanella amazonensis SB2B
PFams: Carboxyl_trans
535 amino acids: PaperBLAST, CDD, Compare to cluster

SM_b21122 Methylcrotonoyl-CoA carboxylase (EC 6.4.1.4) from Sinorhizobium meliloti 1021
PFams: Carboxyl_trans
535 amino acids: PaperBLAST, CDD, Compare to cluster

Psest_1083 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) from Pseudomonas stutzeri RCH2
PFams: Carboxyl_trans
Heteromeric, 535 amino acids: PaperBLAST, CDD, Compare to cluster

AO356_01585 Methylcrotonoyl-CoA carboxylase (EC 6.4.1.4) from Pseudomonas fluorescens FW300-N2C3
PFams: Carboxyl_trans
535 amino acids: PaperBLAST, CDD, Compare to cluster

Pf6N2E2_2192 Methylcrotonoyl-CoA carboxylase (EC 6.4.1.4) from Pseudomonas fluorescens FW300-N2E2
PFams: Carboxyl_trans
535 amino acids: PaperBLAST, CDD, Compare to cluster