Clusters of Characterized Proteins

Clustering the characterized proteins for ddh (meso-diaminopimelate D-dehydrogenase) in L-lysine biosynthesis

Or see other characterized proteins similar to ddh

Or see all steps for L-lysine biosynthesis

Or cluster curated proteins matching a keyword

Definition of ddh

• Curated proteins or TIGRFams with EC 1.4.1.16
• Comment: In reverse, this converts tetrahydrodipicolinate to meso-DAP.

Fetched 11 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 11 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 299-334 amino acids (not heteromeric)

A0A1M5M5H3 diaminopimelate dehydrogenase (EC 1.4.1.16) from Thermosyntropha lipolytica
PFams: GFO_IDH_MocA, DAPDH_C
301 amino acids: PaperBLAST, CDD, Compare to cluster

DAPDH_ACET2 / A3DDX7 Meso-diaminopimelate D-dehydrogenase; DAPDH; Meso-DAP dehydrogenase; EC 1.4.1.16 from Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372) (Clostridium thermocellum)
A3DDX7 diaminopimelate dehydrogenase (EC 1.4.1.16) from Acetivibrio thermocellus
PFams: F420_oxidored, DAPDH_C
334 amino acids: PaperBLAST, CDD, Compare to cluster

F7YTT4 diaminopimelate dehydrogenase (EC 1.4.1.16) from Pseudothermotoga thermarum
PFams: DapB_N, Semialdhyde_dh, DAPDH_C
303 amino acids: PaperBLAST, CDD, Compare to cluster

DAPDH_URETH / G1UII1 Meso-diaminopimelate D-dehydrogenase; DAPDH; Meso-DAP dehydrogenase; EC 1.4.1.16 from Ureibacillus thermosphaericus
G1UII1 diaminopimelate dehydrogenase (EC 1.4.1.16) from Ureibacillus thermosphaericus
PFams: DapB_N, GFO_IDH_MocA, DAPDH_C
326 amino acids: PaperBLAST, CDD, Compare to cluster

Q64PZ8 diaminopimelate dehydrogenase (EC 1.4.1.16) from Bacteroides fragilis
PFams: GFO_IDH_MocA, Semialdhyde_dh, NAD_binding_3, DAPDH_C
299 amino acids: PaperBLAST, CDD, Compare to cluster

Q67PI3 diaminopimelate dehydrogenase (EC 1.4.1.16) from Symbiobacterium thermophilum
PFams: GFO_IDH_MocA, DAPDH_C
299 amino acids: PaperBLAST, CDD, Compare to cluster

Q7MW40 diaminopimelate dehydrogenase (EC 1.4.1.16) from Porphyromonas gingivalis
PFams: CoA_binding, GFO_IDH_MocA, DAPDH_C
301 amino acids: PaperBLAST, CDD, Compare to cluster

Q890V3 diaminopimelate dehydrogenase (EC 1.4.1.16) from Clostridium tetani
PFams: DAPDH_C
326 amino acids: PaperBLAST, CDD, Compare to cluster

Q9KWR0 meso-diaminopimelate dehydrogenase subunit (EC 1.4.1.16) from Lysinibacillus sphaericus
DAPDH_LYSSH / Q9KWR0 Meso-diaminopimelate D-dehydrogenase; DAPDH; Meso-DAP dehydrogenase; Meso-alpha,epsilon-diaminopimelate D-dehydrogenase; EC 1.4.1.16 from Lysinibacillus sphaericus (Bacillus sphaericus)
Q9KWR0 diaminopimelate dehydrogenase (EC 1.4.1.16) from Lysinibacillus sphaericus
PFams: DAPDH_C
326 amino acids: PaperBLAST, CDD, Compare to cluster

P04964 meso-diaminopimelate D-dehydrogenase subunit (EC 1.4.1.16) from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025)
DAPDH_CORGL / P04964 Meso-diaminopimelate D-dehydrogenase; DAPDH; Meso-DAP dehydrogenase; EC 1.4.1.16 from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025)
PFams: DAPDH_C
320 amino acids: PaperBLAST, CDD, Compare to cluster

DAPDH_BACFN / Q5L9Q6 Meso-diaminopimelate D-dehydrogenase; DAPDH; Meso-DAP dehydrogenase; EC 1.4.1.16 from Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / CCUG 4856 / JCM 11019 / NCTC 9343 / Onslow)
PFams: GFO_IDH_MocA, Semialdhyde_dh, NAD_binding_3, DAPDH_C
299 amino acids: PaperBLAST, CDD, Compare to cluster