GapMind for Amino acid biosynthesis

 

Clusters of Characterized Proteins

Clustering the characterized proteins for lysU (homoaconitase small subunit) in L-lysine biosynthesis

Or see other characterized proteins similar to lysU

Or see all steps for L-lysine biosynthesis

Or cluster curated proteins matching a keyword

Definition of lysU

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 163-170 amino acids (heteromeric)

The first sequence in each cluster is the seed.

Q58667 homoaconitase β subunit (EC 4.2.1.36) from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
HACB_METJA / Q58667 Methanogen homoaconitase small subunit; HACN; Homoaconitate hydratase; EC 4.2.1.114 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
PFams: Aconitase_2_N, Aconitase_C
Heteromeric, 170 amino acids: PaperBLAST, CDD, Compare to cluster

Q9ZND9 homoaconitase small subunit (EC 4.2.1.36) from Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27)
HACB_THET2 / Q9ZND9 Homoaconitase small subunit; HACN; Homoaconitate hydratase; EC 4.2.1.36 from Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27)
PFams: Aconitase_C
Heteromeric, 163 amino acids: PaperBLAST, CDD, Compare to cluster