GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for amaD (D-lysine oxidase) in L-lysine catabolism

Or see other characterized proteins similar to amaD

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Or cluster curated proteins matching a keyword

Definition of amaD

Fetched 19 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 15 of these sequences

Found 1 clusters of similar sequences. Another 5 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 320-368 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

A0A077JN67 D-amino-acid oxidase (EC 1.4.3.3) from Rubrobacter xylanophilus
PFams: DAO, FAD_binding_2
324 amino acids: PaperBLAST, CDD, Compare to cluster

O35078 D-amino-acid oxidase (EC 1.4.3.3) from Rattus norvegicus
PFams: DAO
346 amino acids: PaperBLAST, CDD, Compare to cluster

OXDA_PIG / P00371 D-amino-acid oxidase; DAAO; DAMOX; DAO; EC 1.4.3.3 from Sus scrofa (Pig)
P00371 D-amino-acid oxidase (EC 1.4.3.3) from Sus scrofa
PFams: DAO
347 amino acids: PaperBLAST, CDD, Compare to cluster

P14920 D-amino acid oxidase subunit (EC 1.4.3.3) from Homo sapiens
OXDA_HUMAN / P14920 D-amino-acid oxidase; DAAO; DAMOX; DAO; EC 1.4.3.3 from Homo sapiens (Human)
P14920 D-amino-acid oxidase (EC 1.4.3.3) from Homo sapiens
PFams: DAO
347 amino acids: PaperBLAST, CDD, Compare to cluster

P18894 D-amino-acid oxidase (EC 1.4.3.3) from Mus musculus
PFams: DAO
345 amino acids: PaperBLAST, CDD, Compare to cluster

P24552 D-amino-acid oxidase (EC 1.4.3.3) from Fusarium solani
PFams: DAO
361 amino acids: PaperBLAST, CDD, Compare to cluster

P80324 D-amino-acid oxidase (EC 1.4.3.3) from Rhodotorula toruloides
PFams: DAO
368 amino acids: PaperBLAST, CDD, Compare to cluster

Q1AYM8 D-amino-acid oxidase (EC 1.4.3.3) from Rubrobacter xylanophilus
PFams: DAO, FAD_binding_2
326 amino acids: PaperBLAST, CDD, Compare to cluster

Q6R4Q9 D-amino-acid oxidase (EC 1.4.3.3) from Trigonopsis variabilis
PFams: DAO, FAD_binding_2
356 amino acids: PaperBLAST, CDD, Compare to cluster

Q6TGN2 D-amino-acid oxidase (EC 1.4.3.3) from Cyprinus carpio
PFams: DAO
347 amino acids: PaperBLAST, CDD, Compare to cluster

Q7X2D3 D-amino-acid oxidase (EC 1.4.3.3) from Glutamicibacter protophormiae
PFams: DAO
326 amino acids: PaperBLAST, CDD, Compare to cluster

Q99042 D-amino-acid oxidase (EC 1.4.3.3) from Trigonopsis variabilis
PFams: DAO, FAD_binding_2
356 amino acids: PaperBLAST, CDD, Compare to cluster

Q9RIA4 D-amino-acid oxidase (EC 1.4.3.3) from Mycobacterium leprae
PFams: DAO, FAD_binding_2
320 amino acids: PaperBLAST, CDD, Compare to cluster

OXDA_CAEEL / Q95XG9 D-amino-acid oxidase; DAAO; DAMOX; DAO; EC 1.4.3.3 from Caenorhabditis elegans
PFams: DAO
322 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/5 heteromeric)

A0A0E3JXD9 D-amino-acid oxidase (EC 1.4.3.3) from uncultured bacterium
PFams: DAO
357 amino acids: PaperBLAST, CDD

A0PFJ3 D-amino-acid oxidase (EC 1.4.3.3) from Zea mays
PFams: DAO
386 amino acids: PaperBLAST, CDD

O31616 glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis (strain 168)
GLYOX_BACSU / O31616 Glycine oxidase; GO; EC 1.4.3.19 from Bacillus subtilis (strain 168)
O31616 glycine oxidase (EC 1.4.3.19) from Bacillus subtilis
PFams: DAO, NAD_binding_8
369 amino acids: PaperBLAST, CDD

Q9HGY3 D-amino-acid oxidase (EC 1.4.3.3) from Candida boidinii
PFams: DAO
345 amino acids: PaperBLAST, CDD
(similar to BRENDA::Q6R4Q9 from Cluster 1, but similarity to seed sequence is below thresholds)

Q88GX1 D-lysine oxidase (EC 1.4.3.3) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
PFams: DAO
414 amino acids: PaperBLAST, CDD