GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for kamD (L-beta-lysine 5,6-aminomutase, alpha subunit) in L-lysine catabolism

Or see other characterized proteins similar to kamD

Or see all steps for L-lysine catabolism

Or cluster curated proteins matching a keyword

Definition of kamD

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 518-519 amino acids (heteromeric)

The first sequence in each cluster is the seed.

Q8RHX7 L-β-lysine-5,6-aminomutase α subunit (EC 5.4.3.3) from Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131)
KAMD_FUSNN / Q8RHX7 Lysine 5,6-aminomutase alpha subunit; 5,6-LAM; D-lysine 5,6-aminomutase alpha subunit; L-beta-lysine 5,6-aminomutase alpha subunit; EC 5.4.3.3 from Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131)
Q8RHX7 lysine 5,6-aminomutase (subunit 2/2) (EC 5.4.3.3) from Fusobacterium nucleatum
PFams: Lys-AminoMut_A
Heteromeric, 518 amino acids: PaperBLAST, CDD, Compare to cluster

KAMD_ACESD / E3PRJ5 Lysine 5,6-aminomutase alpha subunit; 5,6-LAM; D-lysine 5,6-aminomutase alpha subunit; L-beta-lysine 5,6-aminomutase alpha subunit; EC 5.4.3.3 from Acetoanaerobium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIMB 10654) (Clostridium sticklandii)
E3PRJ5 lysine 5,6-aminomutase (subunit 2/2) (EC 5.4.3.3) from Acetoanaerobium sticklandii
PFams: Lys-AminoMut_A
Heteromeric, 519 amino acids: PaperBLAST, CDD, Compare to cluster