GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for kamE (L-beta-lysine 5,6-aminomutase, beta subunit) in L-lysine catabolism

Or see other characterized proteins similar to kamE

Or see all steps for L-lysine catabolism

Or cluster curated proteins matching a keyword

Definition of kamE

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 262-263 amino acids (heteromeric)

The first sequence in each cluster is the seed.

Q8RHX8 L-β-lysine-5,6-aminomutase β subunit (EC 5.4.3.3) from Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131)
KAME_FUSNN / Q8RHX8 Lysine 5,6-aminomutase beta subunit; 5,6-LAM; D-lysine 5,6-aminomutase beta subunit; L-beta-lysine 5,6-aminomutase beta subunit; EC 5.4.3.3 from Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131)
Q8RHX8 lysine 5,6-aminomutase (subunit 1/2) (EC 5.4.3.3) from Fusobacterium nucleatum
PFams: OAM_dimer, B12-binding
Heteromeric, 263 amino acids: PaperBLAST, CDD, Compare to cluster

KAME_ACESD / E3PRJ4 Lysine 5,6-aminomutase beta subunit; 5,6-LAM; D-lysine 5,6-aminomutase beta subunit; L-beta-lysine 5,6-aminomutase beta subunit; EC 5.4.3.3 from Acetoanaerobium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIMB 10654) (Clostridium sticklandii)
E3PRJ4 lysine 5,6-aminomutase (subunit 1/2) (EC 5.4.3.3) from Acetoanaerobium sticklandii
PFams: OAM_dimer, B12-binding
Heteromeric, 262 amino acids: PaperBLAST, CDD, Compare to cluster