Clusters of Characterized Proteins

GapMind for catabolism of small carbon sources

Clusters of Characterized Proteins

Clustering the characterized proteins for man-isomerase (D-mannose isomerase) in D-mannose catabolism

Or see other characterized proteins similar to man-isomerase

Or see all steps for D-mannose catabolism

Or cluster curated proteins matching a keyword

Definition of man-isomerase

Curated proteins or TIGRFams with EC 5.3.1.7
Ignore hits to AO353_03400 when looking for 'other' hits (Isomerase for D-mannose and D-mannitol catabolism (probably D-mannose-6-phosphate isomerase or D-mannose isomerase))
Ignore hits to Pf1N1B4_597 when looking for 'other' hits (Isomerase for D-mannose and D-mannitol catabolism (probably D-mannose-6-phosphate or D-mannose isomerase))
Ignore hits to AO356_05200 when looking for 'other' hits (Isomerase for D-mannose and D-mannitol catabolism (probably D-mannose-6-phosphate isomerase or D-mannose isomerase))
Comment: Ignore some vaguely annotated mannose or mannose-6-phosphate isomerases

Fetched 7 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 7 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 389-427 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

PGA1_c16670 D-mannose isomerase (EC 5.3.1.7) from Phaeobacter inhibens BS107
PFams: GlcNAc_2-epim
417 amino acids: PaperBLAST, CDD, Compare to cluster

b3880 sulfoquinovose isomerase (EC 5.3.1.31; EC 5.3.1.7) from Escherichia coli K-12 substr. MG1655
P32140 sulfoquinovose isomerase (EC 5.3.1.31; EC 5.3.1.7) from Escherichia coli (strain K12)
SQUS_ECOLI / P32140 Sulfoquinovose isomerase; SQ isomerase; EC 5.3.1.31 from Escherichia coli (strain K12)
RF|NP_418316 uncharacterized sugar isomerase yihS from Escherichia coli K12
PFams: GlcNAc_2-epim
413 amino acids: PaperBLAST, CDD, Compare to cluster

BPHYT_RS02050 D-mannose isomerase (EC 5.3.1.7) from Burkholderia phytofirmans PsJN
PFams: GlcNAc_2-epim
427 amino acids: PaperBLAST, CDD, Compare to cluster

HSERO_RS03650 Mannose isomerase (EC 5.3.1.7) from Herbaspirillum seropedicae SmR1
PFams: GlcNAc_2-epim
396 amino acids: PaperBLAST, CDD, Compare to cluster

Sama_0560 D-mannose isomerase (EC 5.3.1.7) from Shewanella amazonensis SB2B
PFams: GlcNAc_2-epim
389 amino acids: PaperBLAST, CDD, Compare to cluster

PS417_22150 D-mannose isomerase (EC 5.3.1.7) from Pseudomonas simiae WCS417
PFams: GlcNAc_2-epim
419 amino acids: PaperBLAST, CDD, Compare to cluster

Ac3H11_2078 D-mannose isomerase (EC 5.3.1.7) from Acidovorax sp. GW101-3H11
PFams: GlcNAc_2-epim
424 amino acids: PaperBLAST, CDD, Compare to cluster