Clusters of Characterized Proteins

GapMind for catabolism of small carbon sources

Clusters of Characterized Proteins

Clustering the characterized proteins for iolB (5-deoxy-D-glucuronate isomerase) in myo-inositol catabolism

Or see other characterized proteins similar to iolB

Or see all steps for myo-inositol catabolism

Or cluster curated proteins matching a keyword

Definition of iolB

Curated proteins or TIGRFams with EC 5.3.1.30
Curated proteins matching 5-deoxy-glucuronate isomerase
Comment: The EC number is missing from the reannotations

Fetched 9 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 8 of these sequences

Found 1 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 262-271 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

P42413 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) from Bacillus subtilis (strain 168)
IOLB_BACSU / P42413 5-deoxy-glucuronate isomerase; 5DG isomerase; EC 5.3.1.30 from Bacillus subtilis (strain 168)
P42413 5-deoxy-glucuronate isomerase (EC 5.3.1.30) from Bacillus subtilis
PFams: KduI
271 amino acids: PaperBLAST, CDD, Compare to cluster

BPHYT_RS13925 5-deoxy-glucuronate isomerase (EC 5.3.1.-) from Burkholderia phytofirmans PsJN
PFams: KduI
266 amino acids: PaperBLAST, CDD, Compare to cluster

BWI76_RS03075 5-deoxy-glucuronate isomerase (EC 5.3.1.-) from Klebsiella michiganensis M5al
PFams: KduI
269 amino acids: PaperBLAST, CDD, Compare to cluster

SMc00432 5-deoxy-glucuronate isomerase (EC 5.3.1.-) from Sinorhizobium meliloti 1021
PFams: KduI
266 amino acids: PaperBLAST, CDD, Compare to cluster

PS417_11860 5-deoxy-glucuronate isomerase (EC 5.3.1.-) from Pseudomonas simiae WCS417
PFams: KduI
262 amino acids: PaperBLAST, CDD, Compare to cluster

AO353_21345 5-deoxy-glucuronate isomerase (EC 5.3.1.-) from Pseudomonas fluorescens FW300-N2E3
PFams: KduI
269 amino acids: PaperBLAST, CDD, Compare to cluster

AO356_23170 5-deoxy-glucuronate isomerase (EC 5.3.1.-) from Pseudomonas fluorescens FW300-N2C3
PFams: KduI
269 amino acids: PaperBLAST, CDD, Compare to cluster

Pf6N2E2_514 5-deoxy-glucuronate isomerase (EC 5.3.1.-) from Pseudomonas fluorescens FW300-N2E2
PFams: KduI
269 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

PGA1_c07230 5-deoxy-glucuronate isomerase (EC 5.3.1.-) from Phaeobacter inhibens BS107
PFams: KduI
285 amino acids: PaperBLAST, CDD