GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for iolG (myo-inositol 2-dehydrogenase) in myo-inositol catabolism

Or see other characterized proteins similar to iolG

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Definition of iolG

Fetched 12 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 12 of these sequences

Found 2 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 336-346 amino acids (not heteromeric)

E1U887 inositol 2-dehydrogenase (EC 1.1.1.18) from Lactobacillus casei
PFams: GFO_IDH_MocA
346 amino acids: PaperBLAST, CDD, Compare to cluster

P26935 inositol 2-dehydrogenase monomer (EC 1.1.1.18; EC 1.1.1.369) from Bacillus subtilis (strain 168)
IOLG_BACSU / P26935 Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase; Myo-inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase; MI 2-dehydrogenase/DCI 3-dehydrogenase; EC 1.1.1.18; EC 1.1.1.369 from Bacillus subtilis (strain 168)
P26935 inositol 2-dehydrogenase (EC 1.1.1.18); D-chiro-inositol 1-dehydrogenase (EC 1.1.1.369) from Bacillus subtilis
PFams: GFO_IDH_MocA, F420_oxidored, GFO_IDH_MocA_C
344 amino acids: PaperBLAST, CDD, Compare to cluster

A0A0H3FQ94 myo-inositol 2-dehydrogenase (EC 1.1.1.18) from Klebsiella aerogenes (strain ATCC 13048 / DSM 30053 / JCM 1235 / KCTC 2190 / NBRC 13534 / NCIMB 10102 / NCTC 10006)
PFams: GFO_IDH_MocA, GFO_IDH_MocA_C
337 amino acids: PaperBLAST, CDD, Compare to cluster

BWI76_RS03095 Inositol 2-dehydrogenase (EC 1.1.1.18) from Klebsiella michiganensis M5al
PFams: GFO_IDH_MocA, GFO_IDH_MocA_C
337 amino acids: PaperBLAST, CDD, Compare to cluster

PS417_11875 Inositol 2-dehydrogenase (EC 1.1.1.18) from Pseudomonas simiae WCS417
PFams: GFO_IDH_MocA, GFO_IDH_MocA_C
336 amino acids: PaperBLAST, CDD, Compare to cluster

AO353_21365 Inositol 2-dehydrogenase (EC 1.1.1.18) from Pseudomonas fluorescens FW300-N2E3
PFams: GFO_IDH_MocA, GFO_IDH_MocA_C
336 amino acids: PaperBLAST, CDD, Compare to cluster

AO356_23190 Inositol 2-dehydrogenase (EC 1.1.1.18) from Pseudomonas fluorescens FW300-N2C3
PFams: GFO_IDH_MocA, GFO_IDH_MocA_C
336 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 329-350 amino acids (not heteromeric)

SM_b20899 Inositol 2-dehydrogenase (EC 1.1.1.18) from Sinorhizobium meliloti 1021
MI2D_RHIME / O68965 Inositol 2-dehydrogenase; Myo-inositol 2-dehydrogenase; MI-dehydrogenase; EC 1.1.1.18 from Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti)
O68965 inositol 2-dehydrogenase (EC 1.1.1.18) from Sinorhizobium meliloti
PFams: GFO_IDH_MocA, F420_oxidored, GFO_IDH_MocA_C
330 amino acids: PaperBLAST, CDD, Compare to cluster

E1U888 inositol 2-dehydrogenase (EC 1.1.1.18) from Lactobacillus casei
PFams: GFO_IDH_MocA, GFO_IDH_MocA_C
350 amino acids: PaperBLAST, CDD, Compare to cluster

Q9EZV8 inositol 2-dehydrogenase (EC 1.1.1.18) from Sinorhizobium fredii
PFams: GFO_IDH_MocA, F420_oxidored, GFO_IDH_MocA_C
329 amino acids: PaperBLAST, CDD, Compare to cluster

Q9WYP5 myo-inositol 2-dehydrogenase (EC 1.1.1.18) from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
IOLG_THEMA / Q9WYP5 Myo-inositol 2-dehydrogenase; EC 1.1.1.18 from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
Q9WYP5 D-chiro-inositol 1-dehydrogenase (EC 1.1.1.369) from Thermotoga maritima
PFams: GFO_IDH_MocA, GFO_IDH_MocA_C
334 amino acids: PaperBLAST, CDD, Compare to cluster

HSERO_RS12095 Myo-inositol 2-dehydrogenase (EC 1.1.1.18) from Herbaspirillum seropedicae SmR1
PFams: GFO_IDH_MocA
330 amino acids: PaperBLAST, CDD, Compare to cluster