GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for paaK (phenylacetate-CoA ligase) in phenylacetate catabolism

Or see other characterized proteins similar to paaK

Or see all steps for phenylacetate catabolism

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Definition of paaK

Fetched 9 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 9 of these sequences

Found 2 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 432-445 amino acids (not heteromeric)

B4E7B5 phenylacetate-CoA ligase (EC 6.2.1.30) from Burkholderia cenocepacia
PFams: AMP-binding, AMP-binding_C_2
432 amino acids: PaperBLAST, CDD, Compare to cluster

B4EL89 phenylacetate-CoA ligase (EC 6.2.1.30) from Burkholderia cenocepacia
PFams: AMP-binding, AMP-binding_C_2
440 amino acids: PaperBLAST, CDD, Compare to cluster

PAAK_PSEPU / O33469 Phenylacetate-coenzyme A ligase; Phenylacetyl-CoA ligase; PA-CoA ligase; EC 6.2.1.30 from Pseudomonas putida (Arthrobacter siderocapsulatus)
PFams: AMP-binding, AMP-binding_C_2
439 amino acids: PaperBLAST, CDD, Compare to cluster

b1398 phenylacetate-CoA ligase (EC 6.2.1.30) from Escherichia coli K-12 substr. MG1655
PAAK_ECOLI / P76085 Phenylacetate-coenzyme A ligase; Phenylacetyl-CoA ligase; PA-CoA ligase; EC 6.2.1.30 from Escherichia coli (strain K12)
PFams: AMP-binding, AMP-binding_C_2
437 amino acids: PaperBLAST, CDD, Compare to cluster

PAAK_THET2 / Q72K16 Phenylacetate-coenzyme A ligase; Phenylacetyl-CoA ligase; PA-CoA ligase; EC 6.2.1.30 from Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Q72K16 phenylacetate-CoA ligase (EC 6.2.1.30) from Thermus thermophilus
PFams: AMP-binding, AMP-binding_C_2
445 amino acids: PaperBLAST, CDD, Compare to cluster

Q9L9C1 phenylacetate-CoA ligase (aerobic) (EC 6.2.1.30) from Azoarcus evansii
PAAK_AZOEV / Q9L9C1 Phenylacetate-coenzyme A ligase; Phenylacetyl-CoA ligase; PA-CoA ligase; EC 6.2.1.30 from Azoarcus evansii
PFams: AMP-binding, AMP-binding_C_2
440 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 556-578 amino acids (not heteromeric)

A7KUK6 phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum
PFams: AMP-binding, AMP-binding_C
562 amino acids: PaperBLAST, CDD, Compare to cluster

D3GE78 phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum
PFams: AMP-binding, AMP-binding_C
556 amino acids: PaperBLAST, CDD, Compare to cluster

O74725 medium-chain acyl-CoA ligase (EC 6.2.1.2); phenylacetate-CoA ligase (EC 6.2.1.30) from Penicillium chrysogenum
PFams: AMP-binding, AMP-binding_C
578 amino acids: PaperBLAST, CDD, Compare to cluster