GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for livH (L-phenylalanine ABC transporter, permease component 1 (LivH)) in L-phenylalanine catabolism

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Definition of livH

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 307-309 amino acids (1/3 heteromeric)

The first sequence in each cluster is the seed.

A0A0D9B2B6 Branched-chain amino acid ABC transporter permease LivH; SubName: Full=Branched-chain amino acid transporter permease subunit LivH; SubName: Full=L-leucine ABC transporter membrane protein /L-isoleucine ABC transporter membrane protein /L-valine ABC transporter membrane protein
307 amino acids: PaperBLAST, CDD, Compare to cluster

A0A165KC95 ABC transporter permease
309 amino acids: PaperBLAST, CDD, Compare to cluster

b3457 branched chain amino acid/phenylalanine ABC transporter membrane subunit LivH (EC 7.4.2.2) from Escherichia coli K-12 substr. MG1655
P0AEX7 branched chain amino acid/phenylalanine ABC transporter membrane subunit LivH (EC 7.4.2.2) from Escherichia coli (strain K12)
TC 3.A.1.4.1 / P0AEX7 High-affinity branched-chain amino acid transport system permease protein LivH aka B3457, component of Leucine; leucine/isoleucine/valine porter from Escherichia coli
CH_088640 high-affinity branched-chain amino acid ABC transporter, permease protein LivH from Escherichia coli K12
PFams: BPD_transp_2
Heteromeric, 308 amino acids: PaperBLAST, CDD, Compare to cluster