Clusters of Characterized Proteins

Clustering the characterized proteins for HSERO_RS00870 (proline ABC transporter, substrate-binding component) in L-proline catabolism

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Definition of HSERO_RS00870

• UniProt sequence D8IUY1: SubName: Full=ABC-type branched-chain amino acid transport system, periplasmic component protein {ECO:0000313|EMBL:ADJ61700.1};
• UniProt sequence A0A165KTD4: SubName: Full=Branched chain amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:KZT16064.1};
• Comment: 5-part ABC transporter in Herbaspirillum brasilense, identified using fitness data. (This system is distantly related to AZOBR_RS08235:RS08260.) A related system from Acidovorax sp. GW101-3H11 is also important for proline utilization: Ac3H11_2396 (A0A165KTD4), Ac3H11_1695 (A0A165KC95), Ac3H11_1694 (A0A165KER0), Ac3H11_1693 (A0A165KC86), Ac3H11_1692 (A0A165KC78).

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 375-378 amino acids (not heteromeric)

A0A165KTD4 Branched chain amino acid ABC transporter substrate-binding protein
375 amino acids: PaperBLAST, CDD, Compare to cluster

D8IUY1 ABC-type branched-chain amino acid transport system, periplasmic component protein
378 amino acids: PaperBLAST, CDD, Compare to cluster