Clusters of Characterized Proteins

Clustering the characterized proteins for natD (proline ABC transporter, permease component 2 (NatD)) in L-proline catabolism

Or see other characterized proteins similar to natD

Or see all steps for L-proline catabolism

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Definition of natD

• Curated sequence P74318: NatD aka LivH aka SLR0949, component of Leucine/proline/alanine/serine/glycine (and possibly histidine) porter, NatABCDE
• Curated sequence Q8YXD0: NatD, component of The neutral amino acid permease, N-1 (transports pro, phe, leu, gly, ala, ser, gln and his, but gln and his are not transported via NatB)

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 286-288 amino acids (heteromeric)

TC 3.A.1.4.2 / P74318 NatD aka LivH aka SLR0949, component of Leucine/proline/alanine/serine/glycine (and possibly histidine) porter, NatABCDE
PFams: BPD_transp_2
Heteromeric, 286 amino acids: PaperBLAST, CDD, Compare to cluster

TC 3.A.1.4.6 / Q8YXD0 NatD, component of The neutral amino acid permease, N-1 (transports pro, phe, leu, gly, ala, ser, gln and his, but gln and his are not transported via NatB)
PFams: BPD_transp_2
Heteromeric, 288 amino acids: PaperBLAST, CDD, Compare to cluster