GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for mcm-large (methylmalonyl-CoA mutase, large (catalytic) subunit) in propionate catabolism

Or see other characterized proteins similar to mcm-large

Or see all steps for propionate catabolism

Or cluster curated proteins matching a keyword

Definition of mcm-large

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 553-728 amino acids (heteromeric)

The first sequence in each cluster is the seed.

O74009 methylmalonyl-CoA mutase (subunit 2/2) (EC 5.4.99.2) from Pyrococcus horikoshii
PFams: MM_CoA_mutase
Heteromeric, 563 amino acids: PaperBLAST, CDD, Compare to cluster

A4YEG1 methylmalonyl-CoA mutase (subunit 2/2) (EC 5.4.99.2) from Metallosphaera sedula
PFams: MM_CoA_mutase
Heteromeric, 553 amino acids: PaperBLAST, CDD, Compare to cluster

P11653 methylmalonyl-CoA mutase large subunit (EC 5.4.99.2) from Propionibacterium freudenreichii subsp. shermanii
MUTB_PROFR / P11653 Methylmalonyl-CoA mutase large subunit; MCM-alpha; EC 5.4.99.2 from Propionibacterium freudenreichii subsp. shermanii
P11653 methylmalonyl-CoA mutase (EC 5.4.99.2) from Propionibacterium freudenreichii subsp. shermanii
PFams: MM_CoA_mutase, B12-binding
Heteromeric, 728 amino acids: PaperBLAST, CDD, Compare to cluster