Clusters of Characterized Proteins

GapMind for catabolism of small carbon sources

Clusters of Characterized Proteins

Clustering the characterized proteins for potA (putrescine ABC transporter, ATPase component (PotA/PotG)) in putrescine catabolism

Or see other characterized proteins similar to potA

Or see all steps for putrescine catabolism

Or cluster curated proteins matching a keyword

Definition of potA

Curated sequence P31134: PotG aka B0855, component of Putrescine porter. putrescine ABC transporter ATP binding subunit (EC 7.6.2.16). putrescine ABC transporter ATP binding subunit (EC 7.6.2.16)
Curated sequence CH_024626: spermidine/putrescine ABC transporter, ATP-binding protein PotA; EC 3.6.3.31. Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11. Spermidine/putrescine import ATP-binding protein PotA aka B1126, component of Polyamine (putrescine/spermidine) uptake porter. spermidine preferential ABC transporter ATP binding subunit (EC 7.6.2.11; EC 7.6.2.16). spermidine preferential ABC transporter ATP binding subunit (EC 7.6.2.11; EC 7.6.2.16)
Curated sequence Q97Q42: Spermidine/putrescine import ATP-binding protein PotA, component of The spermidine/putrescine uptake porter, PotABCD
Comment: 4-part ABC transporters include E. coli potABCD or potGHIF, which are related to each other, and a related system, also named potABCD, from Streptococcus pneuomoniae.

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 377-385 amino acids (heteromeric)

The first sequence in each cluster is the seed.

b0855 putrescine ABC transporter ATP binding subunit (EC 7.6.2.16) from Escherichia coli K-12 substr. MG1655
P31134 putrescine ABC transporter ATP binding subunit (EC 7.6.2.16) from Escherichia coli (strain K12)
TC 3.A.1.11.2 / P31134 PotG aka B0855, component of Putrescine porter from Escherichia coli
PFams: ABC_tran, TOBE_2
Heteromeric, 377 amino acids: PaperBLAST, CDD, Compare to cluster

b1126 spermidine preferential ABC transporter ATP binding subunit (EC 7.6.2.11; EC 7.6.2.16) from Escherichia coli K-12 substr. MG1655
P69874 spermidine preferential ABC transporter ATP binding subunit (EC 7.6.2.11; EC 7.6.2.16) from Escherichia coli (strain K12)
POTA_ECOLI / P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12)
TC 3.A.1.11.1 / P69874 Spermidine/putrescine import ATP-binding protein PotA aka B1126, component of Polyamine (putrescine/spermidine) uptake porter from Escherichia coli
MB|P69874 spermidine/putrescine ABC transporter, ATP-binding protein PotA; EC 3.6.3.31 from Escherichia coli K12
PFams: ABC_tran, TOBE_2
Heteromeric, 378 amino acids: PaperBLAST, CDD, Compare to cluster

TC 3.A.1.11.7 / Q97Q42 Spermidine/putrescine import ATP-binding protein PotA, component of The spermidine/putrescine uptake porter, PotABCD from Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
PFams: ABC_tran, TOBE_2
Heteromeric, 385 amino acids: PaperBLAST, CDD, Compare to cluster