GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for potC (putrescine ABC transporter, permease component 2 (PotC/PotI)) in putrescine catabolism

Or see other characterized proteins similar to potC

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Definition of potC

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 257-281 amino acids (heteromeric)

The first sequence in each cluster is the seed.

b1124 spermidine preferential ABC transporter membrane subunit PotC (EC 7.6.2.11; EC 7.6.2.16) from Escherichia coli K-12 substr. MG1655
P0AFK6 spermidine preferential ABC transporter membrane subunit PotC (EC 7.6.2.11; EC 7.6.2.16) from Escherichia coli (strain K12)
POTC_ECOLI / P0AFK6 Spermidine/putrescine transport system permease protein PotC from Escherichia coli (strain K12)
TC 3.A.1.11.1 / P0AFK6 Spermidine/putrescine transport system permease protein PotC aka B1124, component of Polyamine (putrescine/spermidine) uptake porter from Escherichia coli
CH_088340 spermidine/putrescine ABC transporter, permease protein PotC from Escherichia coli K12
PFams: BPD_transp_1
Heteromeric, 264 amino acids: PaperBLAST, CDD, Compare to cluster

b0857 putrescine ABC transporter membrane subunit PotI (EC 7.6.2.16) from Escherichia coli K-12 substr. MG1655
P0AFL1 putrescine ABC transporter membrane subunit PotI (EC 7.6.2.16) from Escherichia coli (strain K12)
POTI_ECOLI / P0AFL1 Putrescine transport system permease protein PotI from Escherichia coli (strain K12)
TC 3.A.1.11.2 / P0AFL1 PotI aka B0857, component of Putrescine porter from Escherichia coli
PFams: BPD_transp_1
Heteromeric, 281 amino acids: PaperBLAST, CDD, Compare to cluster

TC 3.A.1.11.7 / Q97Q44 Spermidine/putrescine ABC transporter, permease protein, component of The spermidine/putrescine uptake porter, PotABCD from Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
PFams: BPD_transp_1
Heteromeric, 257 amino acids: PaperBLAST, CDD, Compare to cluster