Clusters of Characterized Proteins

Clustering the characterized proteins for potD (putrescine ABC transporter, substrate-binding component (PotD/PotF)) in putrescine catabolism

Or see other characterized proteins similar to potD

Or see all steps for putrescine catabolism

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Definition of potD

• Curated sequence CH_088339: spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein PotD. Spermidine/putrescine-binding periplasmic protein; SPBP. Spermidine/putrescine-binding periplasmic protein PotD aka B1123, component of Polyamine (putrescine/spermidine) uptake porter. spermidine preferential ABC transporter periplasmic binding protein (EC 7.6.2.11; EC 7.6.2.16). spermidine preferential ABC transporter periplasmic binding protein (EC 7.6.2.11; EC 7.6.2.16)
• Curated sequence P31133: Putrescine-binding periplasmic protein. PotF aka B0854, component of Putrescine porter. putrescine ABC transporter periplasmic binding protein (EC 7.6.2.16). putrescine ABC transporter periplasmic binding protein (EC 7.6.2.16)
• Curated sequence Q97Q45: Spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein, component of The spermidine/putrescine uptake porter, PotABCD
• Curated sequence Q02UB7: Putrescine-binding periplasmic protein SpuD. Putrescine-binding periplasmic protein SpuD
• Comment: SpuD from P. aeruginosa (Q02UB7) is similar and was shown to bind putrescine

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 348-370 amino acids (3/4 heteromeric)

b1123 spermidine preferential ABC transporter periplasmic binding protein (EC 7.6.2.11; EC 7.6.2.16) from Escherichia coli K-12 substr. MG1655
P0AFK9 spermidine preferential ABC transporter periplasmic binding protein (EC 7.6.2.11; EC 7.6.2.16) from Escherichia coli (strain K12)
POTD_ECOLI / P0AFK9 Spermidine/putrescine-binding periplasmic protein; SPBP from Escherichia coli (strain K12)
TC 3.A.1.11.1 / P0AFK9 Spermidine/putrescine-binding periplasmic protein PotD aka B1123, component of Polyamine (putrescine/spermidine) uptake porter from Escherichia coli
CH_088339 spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein PotD from Escherichia coli K12
PFams: Lipoprotein_8, SBP_bac_1, SBP_bac_11, SBP_bac_8, SBP_bac_6
Heteromeric, 348 amino acids: PaperBLAST, CDD, Compare to cluster

b0854 putrescine ABC transporter periplasmic binding protein (EC 7.6.2.16) from Escherichia coli K-12 substr. MG1655
P31133 putrescine ABC transporter periplasmic binding protein (EC 7.6.2.16) from Escherichia coli (strain K12)
POTF_ECOLI / P31133 Putrescine-binding periplasmic protein from Escherichia coli (strain K12)
TC 3.A.1.11.2 / P31133 PotF aka B0854, component of Putrescine porter from Escherichia coli
PFams: SBP_bac_1, SBP_bac_11, SBP_bac_8, SBP_bac_6
Heteromeric, 370 amino acids: PaperBLAST, CDD, Compare to cluster

SPUD_PSEAB / Q02UB7 Putrescine-binding periplasmic protein SpuD from Pseudomonas aeruginosa (strain UCBPP-PA14)
SPUD_PSEAE / Q9I6J1 Putrescine-binding periplasmic protein SpuD from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PFams: Lipoprotein_8, SBP_bac_11, SBP_bac_8, SBP_bac_1, SBP_bac_6
367 amino acids: PaperBLAST, CDD, Compare to cluster

TC 3.A.1.11.7 / Q97Q45 Spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein, component of The spermidine/putrescine uptake porter, PotABCD from Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
PFams: Lipoprotein_8, SBP_bac_1, SBP_bac_11, SBP_bac_8, SBP_bac_6
Heteromeric, 356 amino acids: PaperBLAST, CDD, Compare to cluster