Clusters of Characterized Proteins

Clustering the characterized proteins for ybdD (small subunit of pyruvate transporter (YbdD)) in pyruvate catabolism

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Definition of ybdD

• UniProt sequence P0AAS9: RecName: Full=Uncharacterized protein YbdD;
• Curated sequence RR42_RS20510: required for pyruvate transport, with cstA-like RR42_RS20515
• Comment: E. coli ybdD (P0AAS9) is involved in pyruvate transport with cstA (PMID:29358499). And a similar protein from Cupriavidus basilensis, RR42_RS20510, is important for pyruvate utilization.

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 64-65 amino acids (not heteromeric)

P0AAS9 Uncharacterized protein YbdD
65 amino acids: PaperBLAST, CDD, Compare to cluster

RR42_RS20510 required for pyruvate transport, with cstA-like RR42_RS20515 from Cupriavidus basilensis 4G11
PFams: Sel_put
64 amino acids: PaperBLAST, CDD, Compare to cluster