Clusters of Characterized Proteins

GapMind for catabolism of small carbon sources

Clusters of Characterized Proteins

Clustering the characterized proteins for LRA3 (L-rhamnonate dehydratase) in L-rhamnose catabolism

Or see other characterized proteins similar to LRA3

Or see all steps for L-rhamnose catabolism

Or cluster curated proteins matching a keyword

Definition of LRA3

Curated proteins or TIGRFams with EC 4.2.1.90
Ignore hits to BPHYT_RS34235 when looking for 'other' hits (putative accessory domain for L-fuconate/L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90))
Comment: Ignore BPHYT_RS34235, a putative accessory domain

Fetched 6 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 5 of these sequences

Found 1 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 395-429 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

A3LZU6 L-rhamnonate dehydratase (EC 4.2.1.90) from Scheffersomyces stipitis
PFams: MR_MLE_N, MR_MLE_C
429 amino acids: PaperBLAST, CDD, Compare to cluster

b2247 L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli K-12 substr. MG1655
P77215 L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli (strain K12)
RHMD_ECOLI / P77215 L-rhamnonate dehydratase; RhamD; EC 4.2.1.90 from Escherichia coli (strain K12)
P77215 L-rhamnonate dehydratase (EC 4.2.1.90) from Escherichia coli K-12
PFams: MR_MLE_N, MR_MLE_C
401 amino acids: PaperBLAST, CDD, Compare to cluster

RHMD_POLSJ / Q12DF1 L-rhamnonate dehydratase; RhamD; EC 4.2.1.90 from Polaromonas sp. (strain JS666 / ATCC BAA-500)
PFams: MR_MLE_N, MR_MLE_C
395 amino acids: PaperBLAST, CDD, Compare to cluster

RHMD_SALTY / Q8ZNF9 L-rhamnonate dehydratase; RhamD; EC 4.2.1.90 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8ZNF9 L-rhamnonate dehydratase (EC 4.2.1.90) from Salmonella enterica subsp. enterica serovar Typhimurium
PFams: MR_MLE_N, MR_MLE_C
405 amino acids: PaperBLAST, CDD, Compare to cluster

Q1NEI8 L-rhamnonate dehydratase (EC 4.2.1.90) from Sphingomonas sp. (strain SKA58)
PFams: MR_MLE_N, MR_MLE_C
397 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

BPHYT_RS34230 L-fuconate dehydratase; L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) from Burkholderia phytofirmans PsJN
PFams: GD_AH_C
431 amino acids: PaperBLAST, CDD