GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for rhaD (rhamnulose 1-phosphate aldolase) in L-rhamnose catabolism

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Definition of rhaD

Fetched 9 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 9 of these sequences

Found 2 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 689-730 amino acids (not heteromeric)

P40747 bifunctional L-rhamnulose 1-phosphate aldolase/lactaldehyde dehydrogenase (EC 4.1.2.19; EC 1.2.1.22) from Bacillus subtilis (strain 168)
PFams: Aldolase_II, adh_short, Epimerase, KR, adh_short_C2
689 amino acids: PaperBLAST, CDD, Compare to cluster

A9WGG0 bifunctional L-rhamnulose-phosphate aldolase/L-lactaldehyde dehydrogenase (EC 1.2.1.22; EC 4.1.2.19) from Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)
PFams: Aldolase_II, adh_short, KR, adh_short_C2
730 amino acids: PaperBLAST, CDD, Compare to cluster

Echvi_1572 Lactaldehyde dehydrogenase (EC 1.2.1.22); Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) from Echinicola vietnamensis KMM 6221, DSM 17526
PFams: Aldolase_II, adh_short, KR, adh_short_C2
702 amino acids: PaperBLAST, CDD, Compare to cluster

Dshi_2436 rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22) from Dinoroseobacter shibae DFL-12
PFams: Aldolase_II, adh_short, KR, adh_short_C2
700 amino acids: PaperBLAST, CDD, Compare to cluster

SMc02322 rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22) from Sinorhizobium meliloti 1021
PFams: Aldolase_II, adh_short, KR, adh_short_C2
699 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 236-276 amino acids (not heteromeric)

Q8A1A0 Rhamnulose-1-phosphate aldolase {ECO:0000255|HAMAP-Rule:MF_00770}; EC=4.1.2.19 {ECO:0000255|HAMAP-Rule:MF_00770}
269 amino acids: PaperBLAST, CDD, Compare to cluster

B3902 rhamnulose-1-phosphate aldolase (EC 4.1.2.19) from Escherichia coli K-12 substr. MG1655
P32169 rhamnulose-1-phosphate aldolase (EC 4.1.2.19) from Escherichia coli (strain K12)
RHAD_ECOLI / P32169 Rhamnulose-1-phosphate aldolase; EC 4.1.2.19 from Escherichia coli (strain K12)
P32169 rhamnulose-1-phosphate aldolase (EC 4.1.2.19) from Escherichia coli
PFams: Aldolase_II
274 amino acids: PaperBLAST, CDD, Compare to cluster

R4NQF0 rhamnulose-1-phosphate aldolase (EC 4.1.2.19) from Thermotoga maritima
PFams: Aldolase_II
236 amino acids: PaperBLAST, CDD, Compare to cluster

BWI76_RS00670 Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) from Klebsiella michiganensis M5al
PFams: Aldolase_II
276 amino acids: PaperBLAST, CDD, Compare to cluster