GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for rhaM (L-rhamnose mutarotase) in L-rhamnose catabolism

Or see other characterized proteins similar to rhaM

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Definition of rhaM

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 104-106 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

b3901 L-rhamnose mutarotase (EC 5.1.3.32) from Escherichia coli K-12 substr. MG1655
P32156 L-rhamnose mutarotase (EC 5.1.3.32) from Escherichia coli (strain K12)
RHAM_ECOLI / P32156 L-rhamnose mutarotase; Rhamnose 1-epimerase; Type-3 mutarotase; EC 5.1.3.32 from Escherichia coli (strain K12)
P32156 L-rhamnose mutarotase (EC 5.1.3.32) from Escherichia coli
RF|NP_418337 L-rhamnose mutarotase; EC 5.1.3.n3 from Escherichia coli K12
PFams: rhaM
104 amino acids: PaperBLAST, CDD, Compare to cluster

Q7BSH1 L-rhamnose mutarotase monomer (EC 5.1.3.32) from Rhizobium leguminosarum bv. trifolii
RHAM_RHILT / Q7BSH1 L-rhamnose mutarotase; Rhamnose 1-epimerase; Type-3 mutarotase; EC 5.1.3.32 from Rhizobium leguminosarum bv. trifolii
Q7BSH1 L-rhamnose mutarotase (EC 5.1.3.32) from Rhizobium leguminosarum
PFams: rhaM
106 amino acids: PaperBLAST, CDD, Compare to cluster

PLH21_FORAG / T2KM13 L-rhamnose mutarotase; P21_mutarotase; Polysaccharide utilization locus H protein P21; PUL H protein P21; Rhamnose 1-epimerase; Type-3 mutarotase; EC 5.1.3.32 from Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901)
PFams: rhaM
104 amino acids: PaperBLAST, CDD, Compare to cluster