Clusters of Characterized Proteins

Clustering the characterized proteins for rhaP (L-rhamnose ABC transporter, permease component 1 (RhaP)) in L-rhamnose catabolism

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Definition of rhaP

• Curated sequence Q7BSH3: RhaP, component of Rhamnose porter (Richardson et al., 2004) (Transport activity is dependent on rhamnokinase (RhaK; AAQ92412) activity (Richardson and Oresnik, 2007) This could be an example of group translocation!)
• Comment: 4-part ABC transporter rhaPQST. In TCDB, the rhamnose transporter of Rhizobium leguminosarum is described as rhaSTP but rhaQ (Q7BSH2_RHILT) is also probably part of this system. The comment in TCDB also speculates about group translocation, because the R. leguminosarum system requires the rhamnose/rhamnulose kinase rhaK for activity; but in Sinorhizobium meliloti, which has a similar system, the rhaK protein has rhamnulokinase activity only (Rivers 2015, link).

Fetched 1 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 0 of these sequences

Found 0 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Singletons (1/1 heteromeric)

TC 3.A.1.2.9 / Q7BSH3 RhaP, component of Rhamnose porter (Richardson et al., 2004) (Transport activity is dependent on rhamnokinase (RhaK; AAQ92412) activity (Richardson and Oresnik, 2007) This could be an example of group translocation!) from Rhizobium leguminosarum (biovar trifolii)
PFams: BPD_transp_2
Heteromeric, 333 amino acids: PaperBLAST, CDD