Clusters of Characterized Proteins

Clustering the characterized proteins for rbsA (D-ribose ABC transporter, ATPase component RbsA) in D-ribose catabolism

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Definition of rbsA

• Curated sequence CH_003578: ribose transport, ATP-binding protein RbsA; EC 3.6.3.17. Ribose import ATP-binding protein RbsA; EC 7.5.2.7. RbsA aka B3749, component of Ribose porter. ribose ABC transporter ATP binding subunit. ribose ABC transporter ATP binding subunit
• Curated sequence Q9X051: Ribose import ATP-binding protein RbsA 2, component of D-ribose porter (Nanavati et al., 2006). Induced by ribose
• UniProt sequence D8IUD1: SubName: Full=ABC-type sugar transport system, ATPase component protein {ECO:0000313|EMBL:ADJ63793.1};
• UniProt sequence A0A1N7TZ92: SubName: Full=Ribose ABC transporter ATPase {ECO:0000313|EMBL:ERH60791.1}; SubName: Full=Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:PRW85404.1}; SubName: Full=Sugar ABC transporter ATPase {ECO:0000313|EMBL:AIB37520.1};
• UniProt sequence A0A166R419: SubName: Full=Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:KZN21271.1};
• Comment: E. coli rbsABC and the related system from T. maritima. The fitness data also identified a related system in Herbaspirillum: rbsBAC = HSERO_RS11480 (D8IUD0), HSERO_RS11485 (D8IUD1), HSERO_RS11490 (D8IUD2); and in various Pseudomonas: rbsBAC = PS417_18405 (A0A1N7UEH6) PS417_18400 (A0A1N7TZ92) PS417_18395 (A0A1N7UNQ5) or Pf1N1B4_6035 (A0A161ZH48), Pf1N1B4_6034 (A0A166R419), Pf1N1B4_6033 (A0A166R405).

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 5 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 501-523 amino acids (2/5 heteromeric)

b3749 ribose ABC transporter ATP binding subunit from Escherichia coli K-12 substr. MG1655
P04983 ribose ABC transporter ATP binding subunit from Escherichia coli (strain K12)
RBSA_ECOLI / P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12)
TC 3.A.1.2.1 / P04983 RbsA aka B3749, component of Ribose porter from Escherichia coli
GB|AAC76772.1 ribose transport, ATP-binding protein RbsA; EC 3.6.3.17 from Escherichia coli K12
PFams: ABC_tran, ABC_tran
Heteromeric, 501 amino acids: PaperBLAST, CDD, Compare to cluster

TC 3.A.1.2.19 / Q9X051 Ribose import ATP-binding protein RbsA 2, component of D-ribose porter (Nanavati et al., 2006). Induced by ribose from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
PFams: ABC_tran, ABC_tran
Heteromeric, 523 amino acids: PaperBLAST, CDD, Compare to cluster

A0A166R419 Sugar ABC transporter ATP-binding protein
517 amino acids: PaperBLAST, CDD, Compare to cluster

A0A1N7TZ92 Ribose ABC transporter ATPase; SubName: Full=Sugar ABC transporter ATP-binding protein; SubName: Full=Sugar ABC transporter ATPase
517 amino acids: PaperBLAST, CDD, Compare to cluster

D8IUD1 ABC-type sugar transport system, ATPase component protein
522 amino acids: PaperBLAST, CDD, Compare to cluster