Clusters of Characterized Proteins

Clustering the characterized proteins for rbsC (D-ribose ABC transporter, permease component RbsC) in D-ribose catabolism

Or see other characterized proteins similar to rbsC

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Definition of rbsC

• Curated sequence P0AGI1: Ribose import permease protein RbsC. Ribose transport system permease protein RbsC aka B3750, component of Ribose porter. ribose ABC transporter membrane subunit. ribose ABC transporter membrane subunit
• Curated sequence Q9X050: ABC-type transporter, integral membrane subunit, component of D-ribose porter (Nanavati et al., 2006). Induced by ribose
• UniProt sequence D8IUD2: SubName: Full=ABC-type sugar transport system, permease component protein {ECO:0000313|EMBL:ADJ63794.1};
• UniProt sequence A0A1N7UNQ5: SubName: Full=ABC transporter permease {ECO:0000313|EMBL:AIB37519.1}; SubName: Full=Monosaccharide ABC transporter membrane protein, CUT2 family {ECO:0000313|EMBL:SFA82032.1};
• UniProt sequence A0A166R405: SubName: Full=ABC transporter permease {ECO:0000313|EMBL:KZN21270.1};

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 5 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 321-331 amino acids (2/5 heteromeric)

b3750 ribose ABC transporter membrane subunit from Escherichia coli K-12 substr. MG1655
P0AGI1 ribose ABC transporter membrane subunit from Escherichia coli (strain K12)
RBSC_ECOLI / P0AGI1 Ribose import permease protein RbsC from Escherichia coli (strain K12)
TC 3.A.1.2.1 / P0AGI1 Ribose transport system permease protein RbsC aka B3750, component of Ribose porter from Escherichia coli
PFams: BPD_transp_2
Heteromeric, 321 amino acids: PaperBLAST, CDD, Compare to cluster

TC 3.A.1.2.19 / Q9X050 ABC-type transporter, integral membrane subunit, component of D-ribose porter (Nanavati et al., 2006). Induced by ribose from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
PFams: BPD_transp_2
Heteromeric, 331 amino acids: PaperBLAST, CDD, Compare to cluster

A0A166R405 ABC transporter permease
325 amino acids: PaperBLAST, CDD, Compare to cluster

A0A1N7UNQ5 ABC transporter permease; SubName: Full=Monosaccharide ABC transporter membrane protein, CUT2 family
325 amino acids: PaperBLAST, CDD, Compare to cluster

D8IUD2 ABC-type sugar transport system, permease component protein
328 amino acids: PaperBLAST, CDD, Compare to cluster