Clusters of Characterized Proteins

GapMind for catabolism of small carbon sources

Clusters of Characterized Proteins

Clustering the characterized proteins for rbsK (ribokinase) in D-ribose catabolism

Or see other characterized proteins similar to rbsK

Or see all steps for D-ribose catabolism

Or cluster curated proteins matching a keyword

Definition of rbsK

Curated proteins or TIGRFams with EC 2.7.1.15
Comment: deoxyribose kinases are sometimes annotated with the same EC number; most of these sequences are thought to be ribokinases as well

Fetched 22 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 20 of these sequences

Found 1 clusters of similar sequences. Another 2 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 299-379 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

Q8NQR0 ribokinase (EC 2.7.1.15) from Corynebacterium glutamicum
PFams: PfkB, Phos_pyr_kin
307 amino acids: PaperBLAST, CDD, Compare to cluster

A0A0H2UL04 ribokinase (EC 2.7.1.15) from Vibrio cholerae
PFams: PfkB, Phos_pyr_kin
309 amino acids: PaperBLAST, CDD, Compare to cluster

RBSK_HUMAN / Q9H477 Ribokinase; RK; EC 2.7.1.15 from Homo sapiens (Human)
Q9H477 ribokinase (EC 2.7.1.15) from Homo sapiens
PFams: PfkB, Phos_pyr_kin
322 amino acids: PaperBLAST, CDD, Compare to cluster

b3752 ribokinase (EC 2.7.1.15) from Escherichia coli K-12 substr. MG1655
P0A9J6 ribokinase (EC 2.7.1.15) from Escherichia coli (strain K12)
RBSK_ECOLI / P0A9J6 Ribokinase; RK; EC 2.7.1.15 from Escherichia coli (strain K12)
RF|NP_418208 ribokinase from Escherichia coli K12
PFams: PfkB, Phos_pyr_kin
309 amino acids: PaperBLAST, CDD, Compare to cluster

RBSK_STAAC / A0A0H2WZY4 Ribokinase; RK; EC 2.7.1.15 from Staphylococcus aureus (strain COL)
PFams: PfkB, Phos_pyr_kin
304 amino acids: PaperBLAST, CDD, Compare to cluster

A1A6H3 ribokinase (EC 2.7.1.15) from Arabidopsis thaliana
RBSK_ARATH / A1A6H3 Ribokinase; AtRBSK; RK; EC 2.7.1.15 from Arabidopsis thaliana (Mouse-ear cress)
PFams: PfkB, Phos_pyr_kin
379 amino acids: PaperBLAST, CDD, Compare to cluster

RBSK_LEIMA / E9AD19 Ribokinase; RK; EC 2.7.1.15 from Leishmania major
PFams: PfkB, Phos_pyr_kin
329 amino acids: PaperBLAST, CDD, Compare to cluster

RBSK_SCHPO / O60116 Ribokinase; RK; EC 2.7.1.15 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
PFams: PfkB, Phos_pyr_kin
318 amino acids: PaperBLAST, CDD, Compare to cluster

RBSK_YEAST / P25332 Ribokinase; RK; EC 2.7.1.15 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
PFams: PfkB
333 amino acids: PaperBLAST, CDD, Compare to cluster

Q8XGW5 deoxyribokinase monomer (EC 2.7.1.229) (from HMM only) from Salmonella typhi
PFams: PfkB, Phos_pyr_kin
306 amino acids: PaperBLAST, CDD, Compare to cluster

BPHYT_RS25805 deoxyribose kinase (EC 2.7.1.15) from Burkholderia phytofirmans PsJN
PFams: PfkB, Phos_pyr_kin
328 amino acids: PaperBLAST, CDD, Compare to cluster

BT2803 ribokinase (EC 2.7.1.15) from Bacteroides thetaiotaomicron VPI-5482
PFams: PfkB, Phos_pyr_kin
321 amino acids: PaperBLAST, CDD, Compare to cluster

BT2804 ribokinase (EC 2.7.1.15) from Bacteroides thetaiotaomicron VPI-5482
PFams: PfkB, Phos_pyr_kin
311 amino acids: PaperBLAST, CDD, Compare to cluster

H281DRAFT_01116 deoxyribose kinase (EC 2.7.1.15) from Paraburkholderia bryophila 376MFSha3.1
PFams: PfkB, Phos_pyr_kin
320 amino acids: PaperBLAST, CDD, Compare to cluster

HSERO_RS11500 Ribokinase (EC 2.7.1.15) from Herbaspirillum seropedicae SmR1
PFams: PfkB, Phos_pyr_kin
299 amino acids: PaperBLAST, CDD, Compare to cluster

BWI76_RS00290 Ribokinase (EC 2.7.1.15) from Klebsiella michiganensis M5al
PFams: PfkB, Phos_pyr_kin
309 amino acids: PaperBLAST, CDD, Compare to cluster

SMc01103 Ribokinase (EC 2.7.1.15) from Sinorhizobium meliloti 1021
PFams: PfkB, Phos_pyr_kin
299 amino acids: PaperBLAST, CDD, Compare to cluster

Pf1N1B4_6031 Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens FW300-N1B4
PFams: PfkB, Phos_pyr_kin
305 amino acids: PaperBLAST, CDD, Compare to cluster

AO353_20835 Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens FW300-N2E3
PFams: PfkB, Phos_pyr_kin
305 amino acids: PaperBLAST, CDD, Compare to cluster

AO356_00950 Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens FW300-N2C3
PFams: PfkB, Phos_pyr_kin
304 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/2 heteromeric)

B8CWQ8 ribokinase (EC 2.7.1.15) from Halothermothrix orenii
PFams: PfkB
305 amino acids: PaperBLAST, CDD

RBSKI_LACSD / P83534 Bifunctional ribokinase/ribose-5-phosphate isomerase A; EC 2.7.1.15; EC 5.3.1.6 from Lactobacillus sanfranciscensis (strain ATCC 27651 / DSM 20451 / JCM 5668 / KCTC 3205 / NCIMB 702811 / NRRL B-3934 / L-12)
PFams: PfkB, Phos_pyr_kin, Rib_5-P_isom_A
540 amino acids: PaperBLAST, CDD