GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for srlA (PTS system for sorbitol SrlABE, EII-C2 component SrlA) in D-sorbitol (glucitol) catabolism

Or see other characterized proteins similar to srlA

Or see all steps for D-sorbitol (glucitol) catabolism

Or cluster curated proteins matching a keyword

Definition of srlA

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 182-187 amino acids (2/3 heteromeric)

The first sequence in each cluster is the seed.

PTHC_CLOB8 / O32332 PTS system glucitol/sorbitol-specific EIIC component; EIIC-Gut; Glucitol/sorbitol permease IIC component from Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium acetobutylicum)
TC 4.A.4.1.2 / O32332 Glucitol/sorbitol permease IIC component, component of The Glucitol Enzyme II complex, IICBC (GutA1A2) IIA (GutB) from Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052)
PFams: EII-GUT
Heteromeric, 182 amino acids: PaperBLAST, CDD, Compare to cluster

PTHC_ERWAM / O32521 PTS system glucitol/sorbitol-specific EIIC component; EIIC-Gut; Glucitol/sorbitol permease IIC component from Erwinia amylovora (Fire blight bacteria)
PFams: EII-GUT
182 amino acids: PaperBLAST, CDD, Compare to cluster

b2702 sorbitol-specific PTS enzyme IIC2 component (EC 2.7.1.198; EC 2.7.1.197) from Escherichia coli K-12 substr. MG1655
P56579 sorbitol-specific PTS enzyme IIC2 component (EC 2.7.1.198; EC 2.7.1.197) from Escherichia coli (strain K12)
PTHC_ECOLI / P56579 PTS system glucitol/sorbitol-specific EIIC component; EIIC-Gut; Glucitol/sorbitol permease IIC component from Escherichia coli (strain K12)
TC 4.A.4.1.1 / P56579 PTHC aka SRLA aka GUTA aka SBL aka B2702, component of Glucitol porter from Escherichia coli
PFams: EII-GUT
Heteromeric, 187 amino acids: PaperBLAST, CDD, Compare to cluster