Clusters of Characterized Proteins

Clustering the characterized proteins for dctP (succinate TRAP transporter, component DctP) in succinate catabolism

Or see other characterized proteins similar to dctP

Or see all steps for succinate catabolism

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Definition of dctP

• Curated sequence P37735: C4-dicarboxylate-binding periplasmic protein DctP. DctP, component of Tripartite dicarboxylate:H+ symporter (substrates include: fumarate, D- and L-malate, succinate, succinamide, orotate, iticonate and mesaconate)
• Curated sequence Q9HU18: C4-dicarboxylate-binding periplasmic protein DctP
• Curated sequence 5208945: C4-dicarboxylate-binding periplasmic protein DctP. dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), solute receptor component
• Curated sequence Q9KQR9: C4-dicarboxylate-binding periplasmic protein DctP
• Ignore hits to 6938088 when looking for 'other' hits (alpha-ketoglutarate TRAP transporter, solute receptor component)
• UniProt sequence I7END8: SubName: Full=C4-dicarboxylate-binding periplasmic protein DctP {ECO:0000313|EMBL:AFO91753.1};
• UniProt sequence Q2IUT5: SubName: Full=TRAP dicarboxylate transporter DctP subunit {ECO:0000313|EMBL:ABD08025.1}; Flags: Precursor;
• UniProt sequence Q8ECK4: SubName: Full=TRAP-type C4-dicarboxylate:H+ symport system substrate-binding component DctP {ECO:0000313|EMBL:AAN56138.1};
• Comment: B. subtilis DctB is similar to DctP but is probably involved in sensing, not transport, so is not included. Q2IUT5 = RPB_3329, A3QCW5 = Shew_1446 = 5208945, and Q8ECK4 = SO_3134 were shown to bind succinate (PMC4310620).

Fetched 7 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 7 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 331-339 amino acids (2/7 heteromeric)

Shew_1446 dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), solute receptor component from Shewanella loihica PV-4
DCTP_SHELP / A3QCW5 C4-dicarboxylate-binding periplasmic protein DctP from Shewanella loihica (strain ATCC BAA-1088 / PV-4)
PFams: DctP
Heteromeric, 336 amino acids: PaperBLAST, CDD, Compare to cluster

DCTP_RHOCA / P37735 C4-dicarboxylate-binding periplasmic protein DctP from Rhodobacter capsulatus (Rhodopseudomonas capsulata)
TC 2.A.56.1.1 / P37735 DctP, component of Tripartite dicarboxylate:H+ symporter (substrates include: fumarate, D- and L-malate, succinate, succinamide, orotate, iticonate and mesaconate) from Rhodobacter capsulatus (Rhodopseudomonas capsulata)
PFams: DctP
Heteromeric, 333 amino acids: PaperBLAST, CDD, Compare to cluster

DCTP_PSEAE / Q9HU18 C4-dicarboxylate-binding periplasmic protein DctP from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PFams: DctP
331 amino acids: PaperBLAST, CDD, Compare to cluster

DCTP_VIBCH / Q9KQR9 C4-dicarboxylate-binding periplasmic protein DctP from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
PFams: DctP
332 amino acids: PaperBLAST, CDD, Compare to cluster

I7END8 C4-dicarboxylate-binding periplasmic protein DctP
333 amino acids: PaperBLAST, CDD, Compare to cluster

Q2IUT5 TRAP dicarboxylate transporter DctP subunit; Flags: Precursor
332 amino acids: PaperBLAST, CDD, Compare to cluster

Q8ECK4 TRAP-type C4-dicarboxylate:H+ symport system substrate-binding component DctP
339 amino acids: PaperBLAST, CDD, Compare to cluster