Clusters of Characterized Proteins

Clustering the characterized proteins for SemiSWEET (Sugar transporter SemiSWEET) in sucrose catabolism

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Definition of SemiSWEET

• Curated sequence B0SR19: Sugar transporter SemiSWEET. SemiSWEET half glucose transporter of 93 aas and 3 TMSs with an N-terminal amphipathic α-helix
• Ignore hits to Q8F4F7 when looking for 'other' hits (3 TMS bacterial MtN3 homologue (96aas))
• Ignore hits to P0DMV3 when looking for 'other' hits (Sugar transporter SemiSWEET)
• Ignore hits to A2BS89 when looking for 'other' hits (3 TMS MtN3 homologue (85aas))
• Ignore hits to Q57574 when looking for 'other' hits (3 TMS Sweet homologue, MJ_0110 (93aas))
• Comment: Ignore some uncharacterized homologs: SwissProt::B0SR19, TCDB::Q8F4F7, SwissProt::P0DMV3 (structure is known; transports sucrose poorly; physiological substrate unclear), TCDB::A2BS89, TCDB::Q57574 ("LbSemiSWEET"; has glucose transport activity, but not clear if it is the physiological substrate).

Fetched 1 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 0 of these sequences

Found 0 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Singletons (0/1 heteromeric)

SWEET_LEPBP / B0SR19 Sugar transporter SemiSWEET from Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris)
TC 2.A.123.2.6 / B0SHL1 SemiSWEET half glucose transporter of 93 aas and 3 TMSs with an N-terminal amphipathic α-helix from Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames)
PFams: PQ-loop, MtN3_slv
85 amino acids: PaperBLAST, CDD