GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for gadh2 (gluconate 2-dehydrogenase cytochrome c subunit) in sucrose catabolism

Or see other characterized proteins similar to gadh2

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Or cluster curated proteins matching a keyword

Definition of gadh2

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 434-441 amino acids (2/4 heteromeric)

The first sequence in each cluster is the seed.

Q5FRK5 gluconate 2-dehydrogenase (EC 1.1.1.215) from Gluconobacter oxydans
PFams: Cytochrom_C, Cytochrom_C, Cytochrome_CBB3
437 amino acids: PaperBLAST, CDD, Compare to cluster

O34215 gluconate 2-dehydrogenase cytochrome c subunit (EC 1.1.99.3) from Pantoea cypripedii
GADH2_PANCY / O34215 Gluconate 2-dehydrogenase cytochrome c subunit; GA 2-DH cytochrome c subunit; GADH cytochrome c subunit; EC 1.1.99.3 from Pantoea cypripedii (Pectobacterium cypripedii) (Erwinia cypripedii)
PFams: Cytochrome_CBB3, Cytochrom_C, Cytochrome_CBB3, Cytochrom_C
Heteromeric, 441 amino acids: PaperBLAST, CDD, Compare to cluster

A4PIB1 Gluconate 2-dehydrogenase cytochrome c
441 amino acids: PaperBLAST, CDD, Compare to cluster

Q4KKM6 D-gluconate dehydrogenase cytochrome c subunit (EC 1.1.99.3) from Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)
PFams: Cytochrom_C, Cytochrome_CBB3, Cytochrom_C
Heteromeric, 434 amino acids: PaperBLAST, CDD, Compare to cluster