GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for grdA (glycine reductase component A1) in L-threonine catabolism

Or see other characterized proteins similar to grdA

Or see all steps for L-threonine catabolism

Or cluster curated proteins matching a keyword

Definition of grdA

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 150-158 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

P26971 glycine reductase (EC 1.21.4.2) from Acetoanaerobium sticklandii
PFams: GRDA
158 amino acids: PaperBLAST, CDD, Compare to cluster

Q185M6 glycine reductase (EC 1.21.4.2) from Clostridioides difficile
PFams: GRDA
157 amino acids: PaperBLAST, CDD, Compare to cluster

P26970 glycine reductase system component A (EC 1.21.4.2) from Gottschalkia purinilytica
PFams: GRDA
150 amino acids: PaperBLAST, CDD, Compare to cluster

P50972 glycine/sarcosine/betaine reductase complex component A1 (EC 1.21.4.2) from Peptoclostridium acidaminophilum
PFams: GRDA
158 amino acids: PaperBLAST, CDD, Compare to cluster