GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for ackA (acetate kinase) in thymidine catabolism

Or see other characterized proteins similar to ackA

Or see all steps for thymidine catabolism

Or cluster curated proteins matching a keyword

Definition of ackA

Fetched 25 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 22 of these sequences

Found 1 clusters of similar sequences. Another 3 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 390-433 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

A2RNG4 acetate kinase (EC 2.7.2.1) from Lactococcus lactis
PFams: Acetate_kinase
395 amino acids: PaperBLAST, CDD, Compare to cluster

A2RNG5 acetate kinase (EC 2.7.2.1) from Lactococcus lactis
PFams: Acetate_kinase
395 amino acids: PaperBLAST, CDD, Compare to cluster

C4M1C3 acetate kinase (EC 2.7.2.1); acetate kinase (diphosphate) (EC 2.7.2.12) from Entamoeba histolytica
PFams: Acetate_kinase
392 amino acids: PaperBLAST, CDD, Compare to cluster

E3W769 acetate kinase (EC 2.7.2.1) from Shewanella sp.
PFams: Acetate_kinase
401 amino acids: PaperBLAST, CDD, Compare to cluster

G4T0C7 acetate kinase (EC 2.7.2.1) from Methylomicrobium alcaliphilum
PFams: Acetate_kinase
401 amino acids: PaperBLAST, CDD, Compare to cluster

J9W3A6 acetate kinase (EC 2.7.2.1) from Cryptococcus neoformans
PFams: Acetate_kinase
430 amino acids: PaperBLAST, CDD, Compare to cluster

TDCD_SALTY / O06961 Propionate kinase; EC 2.7.2.15 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
O06961 propionate kinase (EC 2.7.2.15) from Salmonella enterica subsp. enterica serovar Typhimurium
PFams: Acetate_kinase
402 amino acids: PaperBLAST, CDD, Compare to cluster

b2296 acetate kinase (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli K-12 substr. MG1655
P0A6A3 acetate kinase (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli (strain K12)
P0A6A3 acetate kinase (EC 2.7.2.1) from Escherichia coli
RF|NP_416799 acetate kinase; EC 2.7.2.1 from Escherichia coli K12
PFams: Acetate_kinase
400 amino acids: PaperBLAST, CDD, Compare to cluster

P0CW04 acetate kinase (EC 2.7.2.1) from Methanosarcina mazei
PFams: Acetate_kinase
408 amino acids: PaperBLAST, CDD, Compare to cluster

P0CW05 acetate kinase (EC 2.7.2.1) from Methanosarcina mazei
PFams: Acetate_kinase
408 amino acids: PaperBLAST, CDD, Compare to cluster

ACKA_METTE / P38502 Acetate kinase; Acetokinase; EC 2.7.2.1 from Methanosarcina thermophila
P38502 acetate kinase (EC 2.7.2.1) from Methanosarcina thermophila
PFams: Acetate_kinase
408 amino acids: PaperBLAST, CDD, Compare to cluster

ACKA_SALTY / P63411 Acetate kinase; Acetokinase; EC 2.7.2.1 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P63411 acetate kinase (EC 2.7.2.1) from Salmonella enterica subsp. enterica serovar Typhimurium
PFams: Acetate_kinase
400 amino acids: PaperBLAST, CDD, Compare to cluster

P75245 acetate kinase (EC 2.7.2.15) from Mycoplasma pneumoniae (strain ATCC 29342 / M129)
P75245 acetate kinase (EC 2.7.2.1) from Mycoplasma pneumoniae
PFams: Acetate_kinase
390 amino acids: PaperBLAST, CDD, Compare to cluster

Q9F1X7 acetate kinase (EC 2.7.2.1) from Lactobacillus sanfranciscensis
PFams: Acetate_kinase
397 amino acids: PaperBLAST, CDD, Compare to cluster

ACKA_THEMA / Q9WYB1 Acetate kinase; Acetokinase; EC 2.7.2.1 from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
Q9WYB1 acetate kinase (EC 2.7.2.1) from Thermotoga maritima
PDB|2IIR_A acetate kinase; EC 2.7.2.1 from Thermotoga maritima
PFams: Acetate_kinase
403 amino acids: PaperBLAST, CDD, Compare to cluster

b3115 propionate kinase (EC 2.7.2.1; EC 2.7.2.15) from Escherichia coli K-12 substr. MG1655
P11868 propionate kinase (EC 2.7.2.1) from Escherichia coli (strain K12)
TDCD_ECOLI / P11868 Propionate kinase; EC 2.7.2.15 from Escherichia coli (strain K12)
PFams: Acetate_kinase
402 amino acids: PaperBLAST, CDD, Compare to cluster

ACKA_BACSU / P37877 Acetate kinase; Acetokinase; EC 2.7.2.1 from Bacillus subtilis (strain 168)
PFams: Acetate_kinase
395 amino acids: PaperBLAST, CDD, Compare to cluster

P74879 propionate kinase (EC 2.7.2.1) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
PDUW_SALTY / P74879 Probable propionate kinase; EC 2.7.2.15 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
PFams: Acetate_kinase
404 amino acids: PaperBLAST, CDD, Compare to cluster

ACKA_CORGL / P77845 Acetate kinase; Acetokinase; EC 2.7.2.1 from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
PFams: Acetate_kinase
397 amino acids: PaperBLAST, CDD, Compare to cluster

P71104 acetate kinase monomer (EC 2.7.2.15) from Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
PFams: Acetate_kinase
401 amino acids: PaperBLAST, CDD, Compare to cluster

A8J000 acetate kinase (EC 2.7.2.15) from Chlamydomonas reinhardtii
PFams: Acetate_kinase
433 amino acids: PaperBLAST, CDD, Compare to cluster

E3PRH0 acetate kinase (EC 2.7.2.15) from Acetoanaerobium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIMB 10654)
PFams: Acetate_kinase
399 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/3 heteromeric)

b1849 phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15; EC 2.7.2.1) from Escherichia coli K-12 substr. MG1655
P33221 phosphoribosylglycinamide formyltransferase 2 (EC 2.7.2.15) from Escherichia coli (strain K12)
PURT_ECOLI / P33221 Formate-dependent phosphoribosylglycinamide formyltransferase; 5'-phosphoribosylglycinamide transformylase 2; Formate-dependent GAR transformylase; GAR transformylase 2; GART 2; Non-folate glycinamide ribonucleotide transformylase; Phosphoribosylglycinamide formyltransferase 2; EC 2.1.2.- from Escherichia coli (strain K12)
PFams: ATP-grasp_3, ATP-grasp, CPSase_L_D2, Dala_Dala_lig_C
392 amino acids: PaperBLAST, CDD

Q9ZFV5 acetate kinase (EC 2.7.2.15) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
PFams: EutQ, Cupin_3
229 amino acids: PaperBLAST, CDD

P0A208 acetate kinase EutP (EC 2.7.2.15) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
PFams: PduV-EutP
159 amino acids: PaperBLAST, CDD