Clusters of Characterized Proteins

Clustering the characterized proteins for gtsD (glucose ABC transporter, ATPase component (GtsD)) in trehalose catabolism

Or see other characterized proteins similar to gtsD

Or see all steps for trehalose catabolism

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Definition of gtsD

• Curated sequence Q72L52: Sugar-binding transport ATP-binding protein aka MalK1 aka TT_C0211, component of The trehalose/maltose/sucrose/palatinose porter (TTC1627-9) plus MalK1 (ABC protein, shared with 3.A.1.1.24) (Silva et al. 2005; Chevance et al., 2006). The receptor (TTC1627) binds disaccharide alpha-glycosides, namely trehalose (alpha-1,1), sucrose (alpha-1,2), maltose (alpha-1,4), palatinose (alpha-1,6) and glucose
• Ignore hits to Q97UY8 when looking for 'other' hits (monosaccharide-transporting ATPase (EC 3.6.3.17). Glucose import ATP-binding protein GlcV; EC 7.5.2.-. GlcV, component of Glucose, mannose, galactose porter)
• Curated sequence Q88P35: GtsD (GLcK), component of Glucose porter, GtsABCD
• Curated sequence PfGW456L13_1897: ABC transporter for D-Galactose and D-Glucose, ATPase component
• Curated sequence GFF4321: ABC transporter for D-Glucose-6-Phosphate, ATPase component
• UniProt sequence A0A165KQ08: SubName: Full=Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:KZT15785.1};

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 5 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 355-386 amino acids (4/5 heteromeric)

TC 3.A.1.1.24 / TC 3.A.1.1.25 / Q72L52 Sugar-binding transport ATP-binding protein aka MalK1 aka TT_C0211, component of The trehalose/maltose/sucrose/palatinose porter (TTC1627-9) plus MalK1 (ABC protein, shared with 3.A.1.1.24) (Silva et al. 2005; Chevance et al., 2006). The receptor (TTC1627) binds disaccharide alpha-glycosides, namely trehalose (alpha-1,1), sucrose (alpha-1,2), maltose (alpha-1,4), palatinose (alpha-1,6) and glucose from Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
PFams: ABC_tran, OB_MalK, TOBE_2, TOBE
Heteromeric, 376 amino acids: PaperBLAST, CDD, Compare to cluster

TC 3.A.1.1.30 / Q88P35 GtsD (GLcK), component of Glucose porter, GtsABCD from Pseudomonas putida (strain KT2440)
PFams: ABC_tran, OB_MalK, TOBE_2, TOBE
Heteromeric, 384 amino acids: PaperBLAST, CDD, Compare to cluster

A0A165KQ08 Sugar ABC transporter ATP-binding protein
355 amino acids: PaperBLAST, CDD, Compare to cluster

PS417_22130 ABC transporter for D-Glucose-6-Phosphate, ATPase component from Pseudomonas simiae WCS417
PFams: ABC_tran, OB_MalK, TOBE_2, TOBE
Heteromeric, 386 amino acids: PaperBLAST, CDD, Compare to cluster

PfGW456L13_1897 ABC transporter for D-Galactose and D-Glucose, ATPase component from Pseudomonas fluorescens GW456-L13
PFams: ABC_tran, OB_MalK, TOBE_2, TOBE
Heteromeric, 386 amino acids: PaperBLAST, CDD, Compare to cluster