GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for lacB (periplasmic trehalose 3-dehydrogenase, cytochrome c subunit (LacB)) in trehalose catabolism

Or see other characterized proteins similar to lacB

Or see all steps for trehalose catabolism

Or cluster curated proteins matching a keyword

Definition of lacB

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 127-141 amino acids (heteromeric)

The first sequence in each cluster is the seed.

Echvi_1841 predicted cytochrome c component of periplasmic glucoside 3-dehydrogenase (EC 1.1.99.13) from Echinicola vietnamensis KMM 6221, DSM 17526
PFams: Cytochrom_C
Heteromeric, 141 amino acids: PaperBLAST, CDD, Compare to cluster

CA265_RS15360 predicted cytochrome c component of periplasmic glucoside 3-dehydrogenase (EC 1.1.99.13) from Pedobacter sp. GW460-11-11-14-LB5
PFams: Cytochrom_C
Heteromeric, 127 amino acids: PaperBLAST, CDD, Compare to cluster