GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for catB (muconate cycloisomerase) in L-tryptophan catabolism

Or see other characterized proteins similar to catB

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Or cluster curated proteins matching a keyword

Definition of catB

Fetched 6 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 6 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 373-382 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

C6YXG6 Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas reinekei
PFams: MR_MLE_N, MR_MLE_C
377 amino acids: PaperBLAST, CDD, Compare to cluster

Q4K9X1 Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas fluorescens
PFams: MR_MLE_N, MR_MLE_C
382 amino acids: PaperBLAST, CDD, Compare to cluster

P08310 muconate lactonizing enzyme subunit (EC 5.5.1.1) from Pseudomonas putida
CATB_PSEPU / P08310 Muconate cycloisomerase 1; Cis,cis-muconate lactonizing enzyme I; MLE; Muconate cycloisomerase I; EC 5.5.1.1 from Pseudomonas putida (Arthrobacter siderocapsulatus)
PFams: MR_MLE_N, MR_MLE_C
375 amino acids: PaperBLAST, CDD, Compare to cluster

Q4KPK2 muconate cycloisomerase I (EC 5.5.1.1; EC 5.5.1.7) from Pseudomonas reinekei
Q4KPK2 Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas reinekei
PFams: MR_MLE_N, MR_MLE_C
373 amino acids: PaperBLAST, CDD, Compare to cluster

A0F0B3 muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas reinekei
PFams: MR_MLE_N, MR_MLE_C
382 amino acids: PaperBLAST, CDD, Compare to cluster

PS417_23670 Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas simiae WCS417
PFams: MR_MLE_N, MR_MLE_C
375 amino acids: PaperBLAST, CDD, Compare to cluster