Clusters of Characterized Proteins

GapMind for catabolism of small carbon sources

Clusters of Characterized Proteins

Clustering the characterized proteins for tnaA (tryptophanase) in L-tryptophan catabolism

Or see other characterized proteins similar to tnaA

Or see all steps for L-tryptophan catabolism

Or cluster curated proteins matching a keyword

Definition of tnaA

Curated proteins or TIGRFams with EC 4.1.99.1
Curated sequence MONOMER-7584: tryptophanase subunit
Curated sequence MONOMER-7541: tryptophanase subunit
Comment: MONOMER-7584 and -7541 carry out the same reaction but were not linked to the EC number

Fetched 9 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 9 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 454-488 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

A5EYI0 tryptophanase (EC 4.1.99.1) from Vibrio cholerae O1
PFams: Beta_elim_lyase
472 amino acids: PaperBLAST, CDD, Compare to cluster

E9RK37 tryptophanase (EC 4.1.99.1) from Prevotella intermedia
PFams: Beta_elim_lyase
458 amino acids: PaperBLAST, CDD, Compare to cluster

b3708 tryptophanase (EC 4.1.99.1; EC 4.4.1.1; EC 4.4.1.28) from Escherichia coli K-12 substr. MG1655
P0A853 tryptophanase (EC 4.1.99.1; EC 4.4.1.1) from Escherichia coli (strain K12)
TNAA_ECOLI / P0A853 Tryptophanase; L-tryptophan indole-lyase; TNase; EC 4.1.99.1 from Escherichia coli (strain K12)
P0A853 tryptophanase (EC 4.1.99.1) from Escherichia coli
RF|NP_418164 tryptophanase from Escherichia coli K12
PFams: Beta_elim_lyase
471 amino acids: PaperBLAST, CDD, Compare to cluster

P28796 tryptophanase (EC 4.1.99.1) from Proteus vulgaris
PFams: Beta_elim_lyase, Aminotran_1_2
467 amino acids: PaperBLAST, CDD, Compare to cluster

P31015 tryptophanase (EC 4.1.99.1) from Symbiobacterium thermophilum
PFams: Beta_elim_lyase
454 amino acids: PaperBLAST, CDD, Compare to cluster

Q6LP64 tryptophanase (EC 4.1.99.1) from Photobacterium profundum
PFams: Beta_elim_lyase
488 amino acids: PaperBLAST, CDD, Compare to cluster

Q59342 tryptophanase subunit from Klebsiella aerogenes
PFams: Beta_elim_lyase
462 amino acids: PaperBLAST, CDD, Compare to cluster

P31014 tryptophanase subunit from Symbiobacterium thermophilum (strain T / IAM 14863)
PFams: Beta_elim_lyase
454 amino acids: PaperBLAST, CDD, Compare to cluster

BWI76_RS03535 Tryptophanase (EC 4.1.99.1) from Klebsiella michiganensis M5al
PFams: Beta_elim_lyase
462 amino acids: PaperBLAST, CDD, Compare to cluster