GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for tnaB (tryptophan:H+ symporter TnaB) in L-tryptophan catabolism

Or see other characterized proteins similar to tnaB

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Definition of tnaB

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 414-417 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

b3709 tryptophan:H+ symporter TnaB from Escherichia coli K-12 substr. MG1655
P23173 tryptophan:H+ symporter TnaB from Escherichia coli (strain K12)
TC 2.A.42.1.3 / P23173 Low affinity (70 from Escherichia coli
CH_000783 low affinity tryptophan permease from Escherichia coli K12
PFams: Trp_Tyr_perm
415 amino acids: PaperBLAST, CDD, Compare to cluster

MTR_PSEAB / Q02DS7 Tryptophan-specific transport protein; Tryptophan permease from Pseudomonas aeruginosa (strain UCBPP-PA14)
PFams: Trp_Tyr_perm
417 amino acids: PaperBLAST, CDD, Compare to cluster

b3161 tryptophan:H+ symporter Mtr from Escherichia coli K-12 substr. MG1655
P0AAD2 tryptophan:H+ symporter Mtr from Escherichia coli (strain K12)
TC 2.A.42.1.2 / P0AAD2 High affinity (3 from Escherichia coli
PFams: Trp_Tyr_perm
414 amino acids: PaperBLAST, CDD, Compare to cluster