GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for fahA (fumarylacetoacetate hydrolase) in L-tyrosine catabolism

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Definition of fahA

Fetched 9 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 8 of these sequences

Found 2 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 418-431 amino acids (not heteromeric)

FAAA_MOUSE / P35505 Fumarylacetoacetase; FAA; Beta-diketonase; Fumarylacetoacetate hydrolase; EC 3.7.1.2 from Mus musculus (Mouse)
P35505 fumarylacetoacetase (EC 3.7.1.2) from Mus musculus
PFams: FAA_hydrolase_N, FAA_hydrolase
419 amino acids: PaperBLAST, CDD, Compare to cluster

FAH_ARATH / Q8RW90 Fumarylacetoacetase; Fumarylacetoacetate hydrolase; AtFAH; Protein SHORT-DAY SENSITIVE CELL DEATH 1; EC 3.7.1.2 from Arabidopsis thaliana (Mouse-ear cress)
Q8RW90 fumarylacetoacetase (EC 3.7.1.2) from Arabidopsis thaliana
PFams: FAA_hydrolase_N, FAA_hydrolase
421 amino acids: PaperBLAST, CDD, Compare to cluster

Q94272 fumarylacetoacetase (EC 3.7.1.2) from Caenorhabditis elegans
PFams: FAA_hydrolase_N, FAA_hydrolase
418 amino acids: PaperBLAST, CDD, Compare to cluster

GI|2832727 fumarylacetoacetate hydrolase; EC 3.7.1.2 from Emericella nidulans
PFams: FAA_hydrolase_N, FAA_hydrolase
431 amino acids: PaperBLAST, CDD, Compare to cluster

P16930 Fumarylacetoacetase (EC 3.7.1.2) from Homo sapiens
FAAA_HUMAN / P16930 Fumarylacetoacetase; FAA; Beta-diketonase; Fumarylacetoacetate hydrolase; EC 3.7.1.2 from Homo sapiens (Human)
PFams: FAA_hydrolase_N, FAA_hydrolase
419 amino acids: PaperBLAST, CDD, Compare to cluster

FAAA_RAT / P25093 Fumarylacetoacetase; FAA; Beta-diketonase; Fumarylacetoacetate hydrolase; EC 3.7.1.2 from Rattus norvegicus (Rat)
PFams: FAA_hydrolase_N, FAA_hydrolase
419 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 327-328 amino acids (not heteromeric)

SO1670 fumarylacetoacetate hydrolase (EC 3.7.1.2) from Shewanella oneidensis MR-1
PFams: FAA_hydro_N_2, FAA_hydrolase
328 amino acids: PaperBLAST, CDD, Compare to cluster

Psest_3512 fumarylacetoacetate (FAA) hydrolase (EC 3.7.1.2) from Pseudomonas stutzeri RCH2
PFams: FAA_hydro_N_2, FAA_hydrolase
327 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

A0A076VF18 fumarylacetoacetase (EC 3.7.1.2) from Rhodotorula diobovata
PFams: FAA_hydrolase
308 amino acids: PaperBLAST, CDD