GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for Bap2 (L-valine permease Bap2) in L-valine catabolism

Or see other characterized proteins similar to Bap2

Or see all steps for L-valine catabolism

Or cluster curated proteins matching a keyword

Definition of Bap2

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 5 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 536-619 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

TC 2.A.3.10.6 / P38084 Leu/Val/Ile amino acid permease from Saccharomyces cerevisiae (Baker's yeast)
RF|NP_009624.1 Leu/Val/Ile amino-acid permease from Saccharomyces cerevisiae
PFams: AA_permease, AA_permease_2
609 amino acids: PaperBLAST, CDD, Compare to cluster

TAT1_YEAST / P38085 Valine/tyrosine/tryptophan amino-acid permease 1; Tyrosine and tryptophan amino acid transporter 1 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
TC 2.A.3.10.9 / P38085 Val/Tyr/Trp permease from Saccharomyces cerevisiae (Baker's yeast)
RF|NP_009625.1 valine/tyrosine/tryptophan amino-acid permease from Saccharomyces cerevisiae
PFams: AA_permease, AA_permease_2
619 amino acids: PaperBLAST, CDD, Compare to cluster

BAP2_YEAST / P38084 Leu/Val/Ile amino-acid permease; Branched-chain amino-acid permease 2 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
PFams: AA_permease, AA_permease_2
609 amino acids: PaperBLAST, CDD, Compare to cluster

BAP3_YEAST / P41815 Valine amino-acid permease; Branched-chain amino-acid permease 3 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
TC 2.A.3.10.27 / P41815 Valine amino-acid permease (Branched-chain amino-acid permease 3) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
PFams: AA_permease, AA_permease_2
604 amino acids: PaperBLAST, CDD, Compare to cluster

TC 2.A.3.10.22 / Q2VQZ4 Arbuscular mycorrhizal fungal proline:H+ symporter, AAP1 (binds and probably transports nonpolar, hydrophobic amino acids) from Glomus mosseae
PFams: AA_permease, AA_permease_2
536 amino acids: PaperBLAST, CDD, Compare to cluster